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main.tex
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\documentclass[symmetric, justified, a4paper]{tufte-book}
%% configuration, packages
% Switch this variable true/false to print or hide lecturer notes.
\newcommand{\printlecnotes}{true}
\include{config}
%\printnotes{}
\makeindex
%%
% Book metadata
\title{Using \mutation\thanks{Thanks to everyone who worked on this document.}}
\author[Biolab and Collaborators]{Biolab and Collaborators}
\publisher{Biolab}
\begin{document}
% Front matter
\frontmatter
% full title page
\maketitle
\include{ch-copyright}
\tableofcontents
%\include{ch-introduction}
% Start the main matter (normal chapters)
\mainmatter
%% I would like to have an option of not showing the figure number
%% ? How do we avoid overlapping figure captions?
%%%% ORANGE %%%%
\subimport{chapters/001-workflows/}{workflows}
\subimport{chapters/002-basic-data-exploration/}{basic-data-exploration}
\subimport{chapters/003-saving-your-work/}{saving}
\subimport{chapters/004-loading-data/}{loading-data}
\subimport{chapters/spec-001-spectral-data/}{spectral-data}
\subimport{chapters/spec-010-spectral-pca/}{spectral-pca}
\subimport{chapters/spec-003-hyper-basic/}{hyper-basic}
\subimport{chapters/spec-011-preprocessing/}{spectral-preprocessing}
\subimport{chapters/spec-012-integrals-ratios/}{integrals-ratios}
\subimport{chapters/020-classification/}{classification}
\subimport{chapters/021-classification-trees/}{classification-trees}
\subimport{chapters/022-naive-bayes/}{naive-bayes}
\subimport{chapters/029-classification-accuracy/}{classification-accuracy}
\subimport{chapters/030-how-to-cheat/}{how-to-cheat}
\subimport{chapters/025-random-forests/}{random-forests}
\subimport{chapters/032-cross-validation/}{cross-validation}
\subimport{chapters/010-hierarchical-clustering/}{hierarchical-clustering}
\subimport{chapters/011-animal-kingdom/}{animal-kingdom}
\subimport{chapters/spec-030-classification/}{spectra-classification}
\subimport{chapters/spec-021-image-clustering/}{spectra-image-clustering}
\subimport{chapters/spec-022-visualize-distances/}{visualize-distances}
%TODO Marko % Lesson 21: New and Different Test Data
%TODO Feri % Lesson 23: PCA with Spectral Images
%TODO Feri % Lesson 24: Classification on Hyperspectral Images
%TODO Feri % Lesson 25: Preprocessing with EMSC
%TODO Feri % Lesson 26: Adding Annotations
%%
% The back matter contains appendices, bibliographies, indices, glossaries, etc.
\backmatter
\bibliography{sample-handout}
\bibliographystyle{plainnat}
\printindex
\end{document}