main.yaml

# Thid workflow will build and push the import pipeline container.
# the plan later will be to include unit tests as well


name: Building Pipeline Containers

on:
 push:
  branches:
   - 'dev'
   - 'python-update'
jobs:

  starting-notification:
   runs-on: ubuntu-latest
   steps:
     - uses: actions/checkout@v3

     - name: Intital notification
       uses: rtCamp/action-slack-notify@v2
       env:
         SLACK_MESSAGE: 'Creating new pipeline image in docker hub'
         SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
         MSG_MINIMAL: true

  create-docker-image:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3

      - name: docker login
        env:
          DOCKER_USER: ${{ secrets.DOCKER_USER }}
          DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }}
        run: docker login -u $DOCKER_USER -p $DOCKER_PASSWORD

      - name: docker build
        run: docker build -f Dockerfile -t rnacentral/rnacentral-import-pipeline:latest .

      - name: docker push
        run: docker push rnacentral/rnacentral-import-pipeline:latest

  finished-notification:
    needs:
      - create-docker-image
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3

      - name: Finished notification
        uses: rtCamp/action-slack-notify@v2
        env:
          SLACK_MESSAGE: 'New pipeline image pushed to docker hub'
          SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
          MSG_MINIMAL: true

  singularity-conversion:
    needs:
      - create-docker-image
    uses: rnacentral/rnacentral-import-pipeline/.github/workflows/singularity.yaml@dev
    secrets: inherit


  finished-singularity:
    needs:
      - singularity-conversion
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3

      - name: Finished notification
        uses: rtCamp/action-slack-notify@v2
        env:
          SLACK_MESSAGE: 'New singularity image pushed to ghcr'
          SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
          MSG_MINIMAL: true