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sessionInfo-PostR1.txt
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sessionInfo-PostR1.txt
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R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /usr/lib64/libopenblasp-r0.3.3.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=en_US.UTF-8
[9] LC_ADDRESS=en_US.UTF-8 LC_TELEPHONE=en_US.UTF-8 LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=en_US.UTF-8
attached base packages:
[1] grid splines parallel stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] patchwork_1.1.1 SeuratObject_4.0.2 Seurat_4.0.4 dplyr_1.0.7 cicero_1.8.1
[6] Gviz_1.34.1 monocle_2.21.1 DDRTree_0.1.5 irlba_2.3.3 VGAM_1.1-5
[11] stringr_1.4.0 ArchR_1.0.1 magrittr_2.0.1 rhdf5_2.32.2 Matrix_1.3-4
[16] data.table_1.13.0 SummarizedExperiment_1.23.5 Biobase_2.49.1 GenomicRanges_1.45.0 GenomeInfoDb_1.29.8
[21] IRanges_2.27.2 S4Vectors_0.31.5 BiocGenerics_0.39.2 MatrixGenerics_1.2.1 matrixStats_0.58.0
[26] ggplot2_3.3.5
loaded via a namespace (and not attached):
[1] rappdirs_0.3.3 rtracklayer_1.53.1 scattermore_0.7 nabor_0.5.0 tidyr_1.1.2
[6] bit64_4.0.5 knitr_1.30 DelayedArray_0.19.4 rpart_4.1-15 KEGGREST_1.33.0
[11] RCurl_1.98-1.2 AnnotationFilter_1.17.1 doParallel_1.0.16 generics_0.1.0 GenomicFeatures_1.42.3
[16] cowplot_1.1.1 RSQLite_2.2.8 RANN_2.6.1 combinat_0.0-8 future_1.22.1
[21] tzdb_0.1.2 bit_4.0.4 spatstat.data_2.1-0 xml2_1.3.2 httpuv_1.6.3
[26] assertthat_0.2.1 viridis_0.6.1 xfun_0.17 rJava_1.0-5 hms_1.1.1
[31] promises_1.2.0.1 fansi_0.5.0 restfulr_0.0.13 progress_1.2.2 dbplyr_2.1.1
[36] igraph_1.2.5 DBI_1.1.1 geneplotter_1.71.0 htmlwidgets_1.5.4 sparsesvd_0.2
[41] spatstat.geom_2.0-1 purrr_0.3.4 ellipsis_0.3.2 backports_1.1.8 annotate_1.68.0
[46] biomaRt_2.46.3 deldir_0.1-29 vctrs_0.3.8 ensembldb_2.14.1 Cairo_1.5-12.2
[51] ROCR_1.0-11 abind_1.4-5 cachem_1.0.6 withr_2.4.2 BSgenome_1.61.0
[56] checkmate_2.0.0 sctransform_0.3.2 GenomicAlignments_1.29.0 prettyunits_1.1.1 goftest_1.2-3
[61] cluster_2.1.2 lazyeval_0.2.2 crayon_1.4.1 genefilter_1.75.1 labeling_0.4.2
[66] pkgconfig_2.0.3 slam_0.1-48 pkgload_1.2.2 nlme_3.1-153 ProtGenerics_1.25.1
[71] nnet_7.3-16 rlang_0.4.11 globals_0.14.0 lifecycle_1.0.1 miniUI_0.1.1.1
[76] filelock_1.0.2 BiocFileCache_2.1.1 dichromat_2.0-0 rprojroot_2.0.2 polyclip_1.10-0
[81] GSVA_1.36.1 lmtest_0.9-38 graph_1.67.1 Rhdf5lib_1.10.1 zoo_1.8-9
[86] base64enc_0.1-3 ggridges_0.5.3 GlobalOptions_0.1.2 pheatmap_1.0.12 png_0.1-7
[91] viridisLite_0.4.0 rjson_0.2.20 bitops_1.0-7 KernSmooth_2.23-20 Biostrings_2.61.2
[96] blob_1.2.2 shape_1.4.6 parallelly_1.28.1 readr_2.0.2 jpeg_0.1-9
[101] scales_1.1.1 GSEABase_1.55.1 memoise_2.0.0 plyr_1.8.6 ica_1.0-2
[106] zlibbioc_1.39.0 compiler_4.0.3 HSMMSingleCell_1.13.0 BiocIO_1.3.0 RColorBrewer_1.1-2
[111] clue_0.3-59 DESeq2_1.33.5 fitdistrplus_1.1-6 Rsamtools_2.5.3 cli_3.0.1
[116] XVector_0.33.0 listenv_0.8.0 pbapply_1.5-0 htmlTable_2.2.1 Formula_1.2-4
[121] MASS_7.3-54 mgcv_1.8-38 tidyselect_1.1.1 stringi_1.5.3 densityClust_0.3
[126] yaml_2.2.1 askpass_1.1 locfit_1.5-9.4 latticeExtra_0.6-29 ggrepel_0.9.1
[131] VariantAnnotation_1.34.0 tools_4.0.3 future.apply_1.8.1 circlize_0.4.13 rstudioapi_0.13
[136] foreach_1.5.1 foreign_0.8-81 gridExtra_2.3 farver_2.1.0 Rtsne_0.15
[141] digest_0.6.27 FNN_1.1.3 shiny_1.5.0 qlcMatrix_0.9.7 Rcpp_1.0.7
[146] xlsx_0.6.5 later_1.3.0 RcppAnnoy_0.0.18 WriteXLS_6.3.0 httr_1.4.2
[151] AnnotationDbi_1.55.1 biovizBase_1.38.0 ComplexHeatmap_2.9.4 colorspace_2.0-2 XML_3.99-0.5
[156] tensor_1.5 reticulate_1.22 uwot_0.1.10.9000 spatstat.utils_2.1-0 xlsxjars_0.6.1
[161] shinythemes_1.2.0 plotly_4.9.4.1 xtable_1.8-4 jsonlite_1.7.0 testthat_3.1.0
[166] R6_2.5.1 Hmisc_4.4-1 pillar_1.6.3 htmltools_0.5.1.1 mime_0.12
[171] glue_1.4.2 fastmap_1.1.0 BiocParallel_1.23.2 codetools_0.2-18 utf8_1.2.2
[176] lattice_0.20-45 spatstat.sparse_2.0-0 tibble_3.1.5 curl_4.3.2 leiden_0.3.9
[181] gtools_3.9.2 openssl_1.4.2 survival_3.2-3 limma_3.44.3 docopt_0.7.1
[186] desc_1.4.0 fastICA_1.2-3 munsell_0.5.0 GetoptLong_1.0.5 GenomeInfoDbData_1.2.7
[191] iterators_1.0.13 reshape2_1.4.4 gtable_0.3.0 spatstat.core_2.0-0