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I've noticed more studies cropping up which the AMDirT validation checking isn't picking up or can't deal with.
Aida developed some pre-release checks that I recently extended (typically involving binding the libraries/samples tables together) which has picked up lots of things we have to list as 'exceptions'.
These are things such as re-use of data from previous studies, further sequencing etc. that have different PRJ codes than the 'primary' ones originally published; or re-analysis of studies not in the Dir (e.g. pop-gen)
These are currently implemented as (extremely rough!) Rscripts, and are listed here
I've noticed more studies cropping up which the AMDirT validation checking isn't picking up or can't deal with.
Aida developed some pre-release checks that I recently extended (typically involving binding the libraries/samples tables together) which has picked up lots of things we have to list as 'exceptions'.
These are things such as re-use of data from previous studies, further sequencing etc. that have different PRJ codes than the 'primary' ones originally published; or re-analysis of studies not in the Dir (e.g. pop-gen)
These are currently implemented as (extremely rough!) Rscripts, and are listed here
https://github.com/SPAAM-community/AncientMetagenomeDir/wiki/Release-Procedure
We should
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