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statusdb-lims_issues.md

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Statusdb/LIMS issues

2014-01-13

Queue

RNA

  • P576

    missing close date in statusdb

  • P653

    missing close date in statusdb

  • P672

    missing close date in statusdb

Other

  • P570 - OK

    Needs fix in map-reduce view. Added change to production

Ongoing - Libprep

DNA

  • P847

    missing samples/*/library_prep/*/library_validation/*/finish_date

RNA

  • P680

    23 samples not passed libQC. OK(?)

  • P681

    63 samples not passed libQC. OK(?)

  • P682

    34 samples not passed libQC. OK(?)

  • P806

    3 samples not passed libQC. OK(?)

SeqCap

  • P843

    dev: 1 sample not passed libQC. => 5 samples in seq

    In current prod has all 6 samples in libprep

  • P853

    dev: 1 sample not passed libQC. => 10 samples in seq

    In current prod has all 11 samples in libprep

  • P869

    dev: 2 sample not passed libQC. => 46 samples in seq

    In current prod has all 48 samples in libprep

Ongoing - Seq

  • P680

    See Ongoing - Libprep above

    Visible in current prod, but not in dev (where they are in Libprep)

  • P847

    See Ongoing - Libprep above

    dev: ongoing; prod: seq

    missing samples/*/library_prep/*/library_validation/*/finish_date

  • P936

    samples/*/library_prep/*/sample_run_metrics/*/sequencing_run_QC_finished set even if seq run not finished. Use of sequencing_run_QC_finished as a way to get at seq done date for older (?) projects that lack samples/*/library_prep/*/sample_run_metrics/*/sequencing_finish_date Maybe we can't use this? Data for old projects will have to be fixed...