compiling problems with spack install seissol-utils when installing proj,cgns and pugmen

[Jing-Lee-tj]

I have compiling problems with spack install seissol-utils when installing proj,cgns and pugmen, here is my information of envrionment:

root@DESKTOP-TTRCTK2:/opt/seissol-spack-aid# spack --version
0.21.0.dev0 (f6b23b4653c73f60e826086154cad3040c1b61a7)
root@DESKTOP-TTRCTK2:/opt/seissol-spack-aid# git status
On branch main
Your branch is up to date with 'origin/main'.

Changes not staged for commit:
  (use "git add <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
        modified:   spack/packages/seissol-env/package.py

no changes added to commit (use "git add" and/or "git commit -a")
root@DESKTOP-TTRCTK2:/opt/seissol-spack-aid# spack compiler list
==> Available compilers
-- gcc ubuntu22.04-x86_64 ---------------------------------------
[email protected]

when I run with spack install seissol-utils %[email protected] ^parmetis+int64, here is the error information：
proj:

==> Installing proj-4.9.2-3friq5ju6yu4erfqwmeltsi7mmzhvfth [17/81]
==> No binary for proj-4.9.2-3friq5ju6yu4erfqwmeltsi7mmzhvfth found: installing from source
==> Using cached archive: /opt/spack/var/spack/cache/_source-cache/archive/60/60bf9ad1ed1c18158e652dfff97865ba6fb2b67f1511bc8dceae4b3c7e657796.tar.gz
==> Using cached archive: /opt/spack/var/spack/cache/_source-cache/archive/3f/3ff6618a0acc9f0b9b4f6a62e7ff0f7bf538fb4f74de47ad04da1317408fcc15.tar.gz
==> Moving resource stage
        source: /tmp/root/spack-stage/resource-proj-datumgrid-3friq5ju6yu4erfqwmeltsi7mmzhvfth/spack-src/
        destination: /tmp/root/spack-stage/spack-stage-proj-4.9.2-3friq5ju6yu4erfqwmeltsi7mmzhvfth/spack-src/share/proj
==> No patches needed for proj
==> proj: Executing phase: 'autoreconf'
==> proj: Executing phase: 'configure'
==> proj: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    'make' '-j12' 'V=1'

5 errors found in build log:
     796    libtool: compile:  /opt/spack/lib/spack/env/gcc/gcc -DHAVE_CONFIG_H -I. -DPROJ_LIB=\"/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/proj-4.9.2-3friq5ju6yu4erfqwmelts
            i7mmzhvfth/share/proj\" -DMUTEX_pthread -Wall -Wdeclaration-after-statement -g -O2 -MT geodesic.lo -MD -MP -MF .deps/geodesic.Tpo -c geodesic.c -o geodesic.o >/dev/null 2>&1
     797    mv -f .deps/geodesic.Tpo .deps/geodesic.Plo
     798    /bin/bash ../libtool  --tag=CC   --mode=link /opt/spack/lib/spack/env/gcc/gcc -Wall -Wdeclaration-after-statement -g -O2 -no-undefined -version-info 10:0:1  -o libproj.la -rpat
            h /opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/proj-4.9.2-3friq5ju6yu4erfqwmeltsi7mmzhvfth/lib PJ_aeqd.lo PJ_gnom.lo PJ_laea.lo PJ_mod_ster.lo PJ_nsper.lo PJ_nzmg.
            lo PJ_ortho.lo PJ_stere.lo PJ_sterea.lo PJ_aea.lo PJ_bipc.lo PJ_bonne.lo PJ_eqdc.lo PJ_isea.lo PJ_imw_p.lo PJ_krovak.lo PJ_lcc.lo PJ_poly.lo PJ_rpoly.lo PJ_sconics.lo proj_rous
            s.lo PJ_cass.lo PJ_cc.lo PJ_cea.lo PJ_eqc.lo PJ_gall.lo PJ_labrd.lo PJ_lsat.lo PJ_merc.lo PJ_mill.lo PJ_ocea.lo PJ_omerc.lo PJ_somerc.lo PJ_tcc.lo PJ_tcea.lo PJ_tmerc.lo PJ_air
            y.lo PJ_aitoff.lo PJ_august.lo PJ_bacon.lo PJ_chamb.lo PJ_hammer.lo PJ_lagrng.lo PJ_larr.lo PJ_lask.lo PJ_nocol.lo PJ_ob_tran.lo PJ_oea.lo PJ_tpeqd.lo PJ_vandg.lo PJ_vandg2.lo
            PJ_vandg4.lo PJ_wag7.lo PJ_lcca.lo PJ_geos.lo proj_etmerc.lo PJ_boggs.lo PJ_collg.lo PJ_crast.lo PJ_denoy.lo PJ_eck1.lo PJ_eck2.lo PJ_eck3.lo PJ_eck4.lo PJ_eck5.lo PJ_fahey.lo
            PJ_fouc_s.lo PJ_gins8.lo PJ_gstmerc.lo PJ_gn_sinu.lo PJ_goode.lo PJ_igh.lo PJ_hatano.lo PJ_loxim.lo PJ_mbt_fps.lo PJ_mbtfpp.lo PJ_mbtfpq.lo PJ_moll.lo PJ_nell.lo PJ_nell_h.lo P
            J_putp2.lo PJ_putp3.lo PJ_putp4p.lo PJ_putp5.lo PJ_putp6.lo PJ_qsc.lo PJ_robin.lo PJ_sts.lo PJ_urm5.lo PJ_urmfps.lo PJ_wag2.lo PJ_wag3.lo PJ_wink1.lo PJ_wink2.lo pj_latlong.lo
            pj_geocent.lo aasincos.lo adjlon.lo bch2bps.lo bchgen.lo biveval.lo dmstor.lo mk_cheby.lo pj_auth.lo pj_deriv.lo pj_ell_set.lo pj_ellps.lo pj_errno.lo pj_factors.lo pj_fwd.lo p
            j_init.lo pj_inv.lo pj_list.lo pj_malloc.lo pj_mlfn.lo pj_msfn.lo proj_mdist.lo pj_open_lib.lo pj_param.lo pj_phi2.lo pj_pr_list.lo pj_qsfn.lo pj_strerrno.lo pj_tsfn.lo pj_unit
            s.lo pj_ctx.lo pj_log.lo pj_zpoly1.lo rtodms.lo vector1.lo pj_release.lo pj_gauss.lo PJ_healpix.lo PJ_natearth.lo PJ_calcofi.lo pj_fileapi.lo pj_gc_reader.lo pj_gridcatalog.lo
            nad_cvt.lo nad_init.lo nad_intr.lo emess.lo pj_apply_gridshift.lo pj_datums.lo pj_datum_set.lo pj_transform.lo geocent.lo pj_utils.lo pj_gridinfo.lo pj_gridlist.lo jniproj.lo p
            j_mutex.lo pj_initcache.lo pj_apply_vgridshift.lo geodesic.lo pj_strtod.lo  -lpthread -lm
     799    libtool: link: /opt/spack/lib/spack/env/gcc/gcc -shared  -fPIC -DPIC  .libs/PJ_aeqd.o .libs/PJ_gnom.o .libs/PJ_laea.o .libs/PJ_mod_ster.o .libs/PJ_nsper.o .libs/PJ_nzmg.o .libs
            /PJ_ortho.o .libs/PJ_stere.o .libs/PJ_sterea.o .libs/PJ_aea.o .libs/PJ_bipc.o .libs/PJ_bonne.o .libs/PJ_eqdc.o .libs/PJ_isea.o .libs/PJ_imw_p.o .libs/PJ_krovak.o .libs/PJ_lcc.o
             .libs/PJ_poly.o .libs/PJ_rpoly.o .libs/PJ_sconics.o .libs/proj_rouss.o .libs/PJ_cass.o .libs/PJ_cc.o .libs/PJ_cea.o .libs/PJ_eqc.o .libs/PJ_gall.o .libs/PJ_labrd.o .libs/PJ_ls
            at.o .libs/PJ_merc.o .libs/PJ_mill.o .libs/PJ_ocea.o .libs/PJ_omerc.o .libs/PJ_somerc.o .libs/PJ_tcc.o .libs/PJ_tcea.o .libs/PJ_tmerc.o .libs/PJ_airy.o .libs/PJ_aitoff.o .libs/
            PJ_august.o .libs/PJ_bacon.o .libs/PJ_chamb.o .libs/PJ_hammer.o .libs/PJ_lagrng.o .libs/PJ_larr.o .libs/PJ_lask.o .libs/PJ_nocol.o .libs/PJ_ob_tran.o .libs/PJ_oea.o .libs/PJ_tp
            eqd.o .libs/PJ_vandg.o .libs/PJ_vandg2.o .libs/PJ_vandg4.o .libs/PJ_wag7.o .libs/PJ_lcca.o .libs/PJ_geos.o .libs/proj_etmerc.o .libs/PJ_boggs.o .libs/PJ_collg.o .libs/PJ_crast.
            o .libs/PJ_denoy.o .libs/PJ_eck1.o .libs/PJ_eck2.o .libs/PJ_eck3.o .libs/PJ_eck4.o .libs/PJ_eck5.o .libs/PJ_fahey.o .libs/PJ_fouc_s.o .libs/PJ_gins8.o .libs/PJ_gstmerc.o .libs/
            PJ_gn_sinu.o .libs/PJ_goode.o .libs/PJ_igh.o .libs/PJ_hatano.o .libs/PJ_loxim.o .libs/PJ_mbt_fps.o .libs/PJ_mbtfpp.o .libs/PJ_mbtfpq.o .libs/PJ_moll.o .libs/PJ_nell.o .libs/PJ_
            nell_h.o .libs/PJ_putp2.o .libs/PJ_putp3.o .libs/PJ_putp4p.o .libs/PJ_putp5.o .libs/PJ_putp6.o .libs/PJ_qsc.o .libs/PJ_robin.o .libs/PJ_sts.o .libs/PJ_urm5.o .libs/PJ_urmfps.o
            .libs/PJ_wag2.o .libs/PJ_wag3.o .libs/PJ_wink1.o .libs/PJ_wink2.o .libs/pj_latlong.o .libs/pj_geocent.o .libs/aasincos.o .libs/adjlon.o .libs/bch2bps.o .libs/bchgen.o .libs/biv
            eval.o .libs/dmstor.o .libs/mk_cheby.o .libs/pj_auth.o .libs/pj_deriv.o .libs/pj_ell_set.o .libs/pj_ellps.o .libs/pj_errno.o .libs/pj_factors.o .libs/pj_fwd.o .libs/pj_init.o .
            libs/pj_inv.o .libs/pj_list.o .libs/pj_malloc.o .libs/pj_mlfn.o .libs/pj_msfn.o .libs/proj_mdist.o .libs/pj_open_lib.o .libs/pj_param.o .libs/pj_phi2.o .libs/pj_pr_list.o .libs
            /pj_qsfn.o .libs/pj_strerrno.o .libs/pj_tsfn.o .libs/pj_units.o .libs/pj_ctx.o .libs/pj_log.o .libs/pj_zpoly1.o .libs/rtodms.o .libs/vector1.o .libs/pj_release.o .libs/pj_gauss
            .o .libs/PJ_healpix.o .libs/PJ_natearth.o .libs/PJ_calcofi.o .libs/pj_fileapi.o .libs/pj_gc_reader.o .libs/pj_gridcatalog.o .libs/nad_cvt.o .libs/nad_init.o .libs/nad_intr.o .l
            ibs/emess.o .libs/pj_apply_gridshift.o .libs/pj_datums.o .libs/pj_datum_set.o .libs/pj_transform.o .libs/geocent.o .libs/pj_utils.o .libs/pj_gridinfo.o .libs/pj_gridlist.o .lib
            s/jniproj.o .libs/pj_mutex.o .libs/pj_initcache.o .libs/pj_apply_vgridshift.o .libs/geodesic.o .libs/pj_strtod.o   -lpthread -lm  -O2   -Wl,-soname -Wl,libproj.so.9 -o .libs/li
            bproj.so.9.1.0
     800    /usr/bin/ld: .libs/pj_datums.o: warning: relocation against `pj_prime_meridians' in read-only section `.text'
     801    /usr/bin/ld: .libs/PJ_isea.o: relocation R_X86_64_PC32 against symbol `icostriangles' can not be used when making a shared object; recompile with -fPIC
  >> 802    /usr/bin/ld: final link failed: bad value
  >> 803    collect2: error: ld returned 1 exit status
  >> 804    make[2]: *** [Makefile:535: libproj.la] Error 1
     805    make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-proj-4.9.2-3friq5ju6yu4erfqwmeltsi7mmzhvfth/spack-src/src'
  >> 806    make[1]: *** [Makefile:449: all] Error 2
     807    make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-proj-4.9.2-3friq5ju6yu4erfqwmeltsi7mmzhvfth/spack-src/src'
  >> 808    make: *** [Makefile:429: all-recursive] Error 1

See build log for details:
  /tmp/root/spack-stage/spack-stage-proj-4.9.2-3friq5ju6yu4erfqwmeltsi7mmzhvfth/spack-build-out.txt

==> Warning: Skipping build of seissol-utils-develop-bvaad2mqufh4b4tu7fvuilypzkgo23f6 since proj-4.9.2-3friq5ju6yu4erfqwmeltsi7mmzhvfth failed

cgns:

==> Installing cgns-4.4.0-7ir6faedyljiwzrwhlxlzad4ztng5p45 [68/81]
==> No binary for cgns-4.4.0-7ir6faedyljiwzrwhlxlzad4ztng5p45 found: installing from source
==> Using cached archive: /opt/spack/var/spack/cache/_source-cache/archive/3b/3b0615d1e6b566aa8772616ba5fd9ca4eca1a600720e36eadd914be348925fe2.tar.gz
==> No patches needed for cgns
==> cgns: Executing phase: 'cmake'
==> Error: ProcessError: Command exited with status 1:
    '/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cmake-3.27.7-d77nyvnybsph6xkgdkt6qxdfwqjz6zoi/bin/cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cgns-4.4.0-7ir6faedyljiwzrwhlxlzad4ztng5p45' '-DCMAKE_BUILD_TYPE:STRING=Release' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON' '-DCMAKE_INSTALL_RPATH:STRING=/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cgns-4.4.0-7ir6faedyljiwzrwhlxlzad4ztng5p45/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cgns-4.4.0-7ir6faedyljiwzrwhlxlzad4ztng5p45/lib64;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hdf5-1.10.5-zoixygvkdh3beb3v6ppefoebx4cellcr/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openmpi-4.1.6-2ebhisniptlomiw6ixgloaf74amvvsvu/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hwloc-2.9.1-5kgsdoph6qhjs6yf42nsbfsry3gf56oa/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libpciaccess-0.17-wn4ncvrf45gqajg3jbiylxwzc45cs4go/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libxml2-2.10.3-sxv2bnqwdsuyrjulpswrfjdrf5rmwprg/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libiconv-1.17-22e5d7ypcxu6i5vkti77d2nute2beicy/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/xz-5.4.1-vh3hbjl7lzf4udc3ucv5vh4dotonspss/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/zlib-ng-2.1.4-f3en4d3scbvta34nxzndypyg3ju3yuon/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/ncurses-6.4-3j3dohbuanmpnlgaumg2gwt4tutdswb4/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/numactl-2.0.14-6yvuh4adxcgp6j5i2sinqbr4pf5h3cdf/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pmix-5.0.1-lzamjbyaeahq2myg5xlrz7xzpvi5xrwq/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libevent-2.1.12-rw4huzmgpfw2arzbaa2ceuc6s662swsz/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openssl-3.1.3-divxfkfb2rorcthiibsn7uju7qtzht7o/lib64' '-DCMAKE_PREFIX_PATH:STRING=/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hdf5-1.10.5-zoixygvkdh3beb3v6ppefoebx4cellcr;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openmpi-4.1.6-2ebhisniptlomiw6ixgloaf74amvvsvu;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pmix-5.0.1-lzamjbyaeahq2myg5xlrz7xzpvi5xrwq;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libevent-2.1.12-rw4huzmgpfw2arzbaa2ceuc6s662swsz;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/numactl-2.0.14-6yvuh4adxcgp6j5i2sinqbr4pf5h3cdf;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hwloc-2.9.1-5kgsdoph6qhjs6yf42nsbfsry3gf56oa;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libxml2-2.10.3-sxv2bnqwdsuyrjulpswrfjdrf5rmwprg;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/xz-5.4.1-vh3hbjl7lzf4udc3ucv5vh4dotonspss;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libpciaccess-0.17-wn4ncvrf45gqajg3jbiylxwzc45cs4go;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cmake-3.27.7-d77nyvnybsph6xkgdkt6qxdfwqjz6zoi;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openssl-3.1.3-divxfkfb2rorcthiibsn7uju7qtzht7o;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/zlib-ng-2.1.4-f3en4d3scbvta34nxzndypyg3ju3yuon;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/ncurses-6.4-3j3dohbuanmpnlgaumg2gwt4tutdswb4;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libiconv-1.17-22e5d7ypcxu6i5vkti77d2nute2beicy;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/gmake-4.4.1-gplawhybyvwqborzzzgy7ybalaj6lhn3' '-DCGNS_ENABLE_FORTRAN:BOOL=OFF' '-DCGNS_ENABLE_SCOPING:BOOL=ON' '-DCGNS_ENABLE_PARALLEL:BOOL=ON' '-DCGNS_ENABLE_TESTS:BOOL=OFF' '-DCGNS_BUILD_TESTING:BOOL=OFF' '-DCGNS_BUILD_CGNSTOOLS:BOOL=OFF' '-DCGNS_BUILD_SHARED:BOOL=ON' '-DCGNS_BUILD_STATIC:BOOL=OFF' '-DCGNS_ENABLE_BASE_SCOPE:BOOL=OFF' '-DCGNS_ENABLE_LEGACY:BOOL=OFF' '-DCGNS_ENABLE_MEM_DEBUG:BOOL=OFF' '-DCMAKE_POSITION_INDEPENDENT_CODE:BOOL=OFF' '-DCGNS_ENABLE_64BIT:BOOL=OFF' '-DCMAKE_C_COMPILER=/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openmpi-4.1.6-2ebhisniptlomiw6ixgloaf74amvvsvu/bin/mpicc' '-DCMAKE_CXX_COMPILER=/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openmpi-4.1.6-2ebhisniptlomiw6ixgloaf74amvvsvu/bin/mpic++' '-DCGNS_ENABLE_HDF5:BOOL=ON' '-DHDF5_NEED_ZLIB:BOOL=ON' '-DHDF5_INCLUDE_DIR:PATH=/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hdf5-1.10.5-zoixygvkdh3beb3v6ppefoebx4cellcr/include' '-DHDF5_LIBRARY_DIR:PATH=/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hdf5-1.10.5-zoixygvkdh3beb3v6ppefoebx4cellcr/lib' '-DHDF5_NEED_MPI:BOOL=ON' '-DHDF5_ENABLE_PARALLEL:BOOL=ON' '/tmp/root/spack-stage/spack-stage-cgns-4.4.0-7ir6faedyljiwzrwhlxlzad4ztng5p45/spack-src'

2 errors found in build log:
     22    -- HDF5 link libs: hdf5::hdf5-shared
     23    -- Found MPI_C: /opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openmpi-4.1.6-2ebhisniptlomiw6ixgloaf74amvvsvu/bin/mpicc (found version "3.1")
     24    -- Found MPI: TRUE (found version "3.1")
     25    -- Checking C compiler flag -std=gnu99
     26    -- Performing Test std-gnu99
     27    -- Performing Test std-gnu99 - Success
  >> 28    CMake Error at /tmp/root/spack-stage/spack-stage-cgns-4.4.0-7ir6faedyljiwzrwhlxlzad4ztng5p45/spack-build-7ir6fae/CMakeFiles/CMakeTmp/cmTC_c0614Targets.cmake:21 (set_target_prope
           rties):
     29      The link interface of target "hdf5::hdf5-shared" contains:
     30
     31        Threads::Threads
     32
     33      but the target was not found.  Possible reasons include:
     34

     ...

     37        * An ALIAS target is missing.
     38
     39    Call Stack (most recent call first):
     40      /tmp/root/spack-stage/spack-stage-cgns-4.4.0-7ir6faedyljiwzrwhlxlzad4ztng5p45/spack-build-7ir6fae/CMakeFiles/CMakeTmp/CMakeLists.txt:15 (include)
     41
     42
  >> 43    CMake Error at src/CMakeLists.txt:369 (try_compile):
     44      Failed to generate test project build system.
     45    Call Stack (most recent call first):
     46      src/CMakeLists.txt:439 (CHECK_HDF5_FEATURE)
     47
     48
     49    -- Configuring incomplete, errors occurred!

See build log for details:
  /tmp/root/spack-stage/spack-stage-cgns-4.4.0-7ir6faedyljiwzrwhlxlzad4ztng5p45/spack-build-out.txt

==> Warning: Skipping build of gmsh-4.10.3-42jcs6y2xlrsv5lagveahidb4sxqkjmj since cgns-4.4.0-7ir6faedyljiwzrwhlxlzad4ztng5p45 failed

pugment:

==> Installing pumgen-develop-csjcadck3ab77rpnav52yotfbiqoxjdd [75/81]
==> No binary for pumgen-develop-csjcadck3ab77rpnav52yotfbiqoxjdd found: installing from source
==> No patches needed for pumgen
==> pumgen: Executing phase: 'cmake'
==> Error: ProcessError: Command exited with status 1:
    '/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cmake-3.27.7-d77nyvnybsph6xkgdkt6qxdfwqjz6zoi/bin/cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumgen-develop-csjcadck3ab77rpnav52yotfbiqoxjdd' '-DCMAKE_BUILD_TYPE:STRING=Release' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON' '-DCMAKE_INSTALL_RPATH:STRING=/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumgen-develop-csjcadck3ab77rpnav52yotfbiqoxjdd/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumgen-develop-csjcadck3ab77rpnav52yotfbiqoxjdd/lib64;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hdf5-1.10.5-zoixygvkdh3beb3v6ppefoebx4cellcr/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openmpi-4.1.6-2ebhisniptlomiw6ixgloaf74amvvsvu/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hwloc-2.9.1-5kgsdoph6qhjs6yf42nsbfsry3gf56oa/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libpciaccess-0.17-wn4ncvrf45gqajg3jbiylxwzc45cs4go/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libxml2-2.10.3-sxv2bnqwdsuyrjulpswrfjdrf5rmwprg/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libiconv-1.17-22e5d7ypcxu6i5vkti77d2nute2beicy/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/xz-5.4.1-vh3hbjl7lzf4udc3ucv5vh4dotonspss/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/zlib-ng-2.1.4-f3en4d3scbvta34nxzndypyg3ju3yuon/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/ncurses-6.4-3j3dohbuanmpnlgaumg2gwt4tutdswb4/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/numactl-2.0.14-6yvuh4adxcgp6j5i2sinqbr4pf5h3cdf/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pmix-5.0.1-lzamjbyaeahq2myg5xlrz7xzpvi5xrwq/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libevent-2.1.12-rw4huzmgpfw2arzbaa2ceuc6s662swsz/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumi-2.2.8-g3fhkxuart2brhdzdbzfuytq4vbl7d3i/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/zoltan-3.83-q6y4colpahguqf3mmavkne22l2elf54t/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/metis-5.1.0-3zbghvdwjiybvbsjqrcdzqp2pv5tstqu/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/parmetis-4.0.3-ggtvobialipqtj76gctypsxmrtpwlnjt/lib;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openssl-3.1.3-divxfkfb2rorcthiibsn7uju7qtzht7o/lib64' '-DCMAKE_PREFIX_PATH:STRING=/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumi-2.2.8-g3fhkxuart2brhdzdbzfuytq4vbl7d3i;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/zoltan-3.83-q6y4colpahguqf3mmavkne22l2elf54t;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/parmetis-4.0.3-ggtvobialipqtj76gctypsxmrtpwlnjt;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/metis-5.1.0-3zbghvdwjiybvbsjqrcdzqp2pv5tstqu;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hdf5-1.10.5-zoixygvkdh3beb3v6ppefoebx4cellcr;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openmpi-4.1.6-2ebhisniptlomiw6ixgloaf74amvvsvu;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pmix-5.0.1-lzamjbyaeahq2myg5xlrz7xzpvi5xrwq;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libevent-2.1.12-rw4huzmgpfw2arzbaa2ceuc6s662swsz;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/numactl-2.0.14-6yvuh4adxcgp6j5i2sinqbr4pf5h3cdf;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hwloc-2.9.1-5kgsdoph6qhjs6yf42nsbfsry3gf56oa;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libxml2-2.10.3-sxv2bnqwdsuyrjulpswrfjdrf5rmwprg;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/xz-5.4.1-vh3hbjl7lzf4udc3ucv5vh4dotonspss;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libpciaccess-0.17-wn4ncvrf45gqajg3jbiylxwzc45cs4go;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/cmake-3.27.7-d77nyvnybsph6xkgdkt6qxdfwqjz6zoi;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openssl-3.1.3-divxfkfb2rorcthiibsn7uju7qtzht7o;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/zlib-ng-2.1.4-f3en4d3scbvta34nxzndypyg3ju3yuon;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/ncurses-6.4-3j3dohbuanmpnlgaumg2gwt4tutdswb4;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/libiconv-1.17-22e5d7ypcxu6i5vkti77d2nute2beicy;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/gmake-4.4.1-gplawhybyvwqborzzzgy7ybalaj6lhn3' '-DSIMMETRIX:BOOL=OFF' '-DNETCDF:BOOL=OFF' '/tmp/root/spack-stage/spack-stage-pumgen-develop-csjcadck3ab77rpnav52yotfbiqoxjdd/spack-src'

1 error found in build log:
     18    -- Found OpenMP: TRUE (found version "4.5")
     19    -- Found MPI_C: /opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openmpi-4.1.6-2ebhisniptlomiw6ixgloaf74amvvsvu/lib/libmpi.so (found version "3.1")
     20    -- Found MPI_CXX: /opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/openmpi-4.1.6-2ebhisniptlomiw6ixgloaf74amvvsvu/lib/libmpi.so (found version "3.1")
     21    -- Found MPI: TRUE (found version "3.1")
     22    -- Found APF: /opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumi-2.2.8-g3fhkxuart2brhdzdbzfuytq4vbl7d3i/include;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11
           .4.0/pumi-2.2.8-g3fhkxuart2brhdzdbzfuytq4vbl7d3i/include;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumi-2.2.8-g3fhkxuart2brhdzdbzfuytq4vbl7d3i/include;/opt/spack
           /opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumi-2.2.8-g3fhkxuart2brhdzdbzfuytq4vbl7d3i/include;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumi-2.2.8-g3fhkxua
           rt2brhdzdbzfuytq4vbl7d3i/include;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumi-2.2.8-g3fhkxuart2brhdzdbzfuytq4vbl7d3i/include;/opt/spack/opt/spack/linux-ubuntu2
           2.04-skylake/gcc-11.4.0/pumi-2.2.8-g3fhkxuart2brhdzdbzfuytq4vbl7d3i/include;/opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/pumi-2.2.8-g3fhkxuart2brhdzdbzfuytq4vbl7d3i
           /include
     23    -- Configuring done (1.0s)
  >> 24    CMake Error at /opt/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.4.0/hdf5-1.10.5-zoixygvkdh3beb3v6ppefoebx4cellcr/share/cmake/hdf5/hdf5-targets.cmake:70 (set_target_properti
           es):
     25      The link interface of target "hdf5::hdf5-shared" contains:
     26
     27        Threads::Threads
     28
     29      but the target was not found.  Possible reasons include:
     30

See build log for details:
  /tmp/root/spack-stage/spack-stage-pumgen-develop-csjcadck3ab77rpnav52yotfbiqoxjdd/spack-build-out.txt

[Galasnow]

Hello, I met similar problem with you, and I manage to solve it in PR #20, can you test on your computer?

[markyoder]

I agree. I removed all of the upper version limits in the package.py files. Some of the older components, and their build scripts, appear to be no longer be compatible with newer versions.