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Code for the analysis in: Alveolar Repair Following Lipopolysaccharide-induced Injury Requires Cell-Extracellular Matrix Interactions

This is the R code needed to repeat the anlaysis in the manuscript:

Alveolar Repair Following Lipopolysaccharide-induced Injury Requires Cell-Extracellular Matrix Interactions

Jennifer M. Sucre1,4, Fabian Bock2, Nicholas M. Negretti1, John T. Benjamin1, Peter M. Gulleman1, Xinyu Dong2, Kimberly T. Ferguson1, Christopher S. Jetter1, Wei Han3, Yang Liu3, Seunghyi Kook1, Jason Gokey3, Susan H. Guttentag1, Jonathan A. Kropski3,4,5, Timothy S. Blackwell3,4,5, Roy Zent2,4,5, Erin J. Plosa1

  1. Department of Pediatrics, Division of Neonatology, Vanderbilt University Medical Center, Nashville, TN 37232, USA
  2. Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232, USA
  3. Department of Medicine, Division of Allergy, Pulmonary, and Critical Care Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA
  4. Department of Cell and Developmental Biology, Vanderbilt University Medical Center, Nashville, TN 37232, USA
  5. Nashville Veterans Affairs Medical Center, Nashville, TN 37232, USA

R version 4.1.1 was used to run all of this code. The environment is stored in an renv. Details can be found in the renv.lock file.