Minor update to pass CRAN checks
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removed imports for unused packages
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removed dependency on deprecated sparse matrices
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correct links in citations and vignettes
Updates maintainer contact details.
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resolves vignette formatting #11
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passes updated CRAN checks (links updated)
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Update citation to reflect acceptance at JOSS
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Update documentation (package help page, links and cross-references)
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Critical changes to vignettes to reduce build time (required for regular CRAN checks)
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Major stable release: note changes to results are possible! (legacy code should run without breaking)
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Expanded documentation and examples (consolidate into fewer vignettes for clarity)
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Resolves errors handling inhibiting edges
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Efficiently compute a state matrix from a vector of edge properties from paths
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Enables passing "sd" (standard deviation) to alter covariance of Sigma matrix
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Adds methods for computing using Laplacian matrices
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Adds function to compute simulations directly from an adjacency matrix
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Migrates computing states to sigma (these matrices include inhibitions)
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Initial CRAN release
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Unit testing for all functions
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Checking for compatible inputs
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Passing layout parameters to plotting function
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Full vignette of biological pathway
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Merge plot_directed from function from plot.igraph to avoid github dependencies
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Added example data for reactome pathways
- Initial version of the package for generating simulated data