RunGREGOR.def

Bootstrap: library
From: ubuntu:18.04

%files
    /local/users/athib/GREGORSingularity/GREGOR/ /

%post
    apt-get -y update
    apt-get install -y gcc
    apt-get install -y g++
    apt-get install -y bzip2
    apt-get install -y libbz2-dev
    apt-get install -y zlib1g-dev
    apt-get install -y liblzma-dev
    apt-get install -y python3.6
    apt-get install -y software-properties-common
    apt-add-repository universe
    apt-get -y update
    apt-get install -y python3-pip
    apt-get install -y python-pip
    apt-get install -y python-tk
    yes | pip3 install numpy cython pandas
    yes | pip install numpy cython pandas
    apt-get install libswitch-perl
    apt-get install libdbi-perl
    apt-get install -y libdbd-sqlite3-perl

%runscript
    /GREGOR/GREGORRunScript.sh "$@"

%labels
    Singularity Image for running GREGOR v1.4.0, which can be downloaded from http://csg.sph.umich.edu/GREGOR/index.php/site/index