stylesheet.tex

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%		~~~~ EDITOR'S NOTE ~~~~
%%
%% This file contains the stylesheet
%% 
%% This is the PhD thesis of Laurens P. Stoop in LaTeX
%%                       - Comments, remarks and more: email me at laurensstoop@protonmail.com
%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% For template only
\usepackage{lipsum}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% ~~~~ Extra package invocation & Settings

%% For acces to special signs
\usepackage{marvosym}


%% For access to written out month/year information & setting this
\usepackage{datetime}
\newdateformat{monthyeardate}{\monthname[\THEMONTH] \THEYEAR}

%% Create a list of acronyms.
\usepackage{acro}
% Set the acronyms in the PDF to link back to the acronym list
\acsetup{make-links=true}


%% Allow for the page-layout to be show explicit
\usepackage{layout}

%% For better TOC's
\usepackage{tocloft}

%% For making the parskip command work better
\usepackage[parfill]{parskip}

%% Neater font encoding
\usepackage[T1]{fontenc}

%% For setting space within document
\usepackage{setspace}


\usepackage{import}
%\usepackage[final]{changes}
%\usepackage{dblfloatfix}

%% To generate lipsum text
\usepackage{lipsum}
\usepackage{mdframed}

% For nicer subfigures
\usepackage{subcaption}

% for nicer non-forced page breaks
\usepackage{afterpage}

\usepackage{bm}


\usepackage[many]{tcolorbox}

% Package to provide a way to review
%       - gives TeXstudio access to the tools
%\usepackage{easyReview}

% for the cross-page table for the SIKS dissertation list
\usepackage{xltabular}
% for midrules within the SIKS dissertation list
\usepackage{booktabs}

\usepackage{csquotes}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% ~~~~ PDF Settings

%% Fix inclusion of color name in PDF TOC
\pdfstringdefDisableCommands{%
	\def\color#1#{\@gobble}%
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% ~~~~ Left-opening pages

%% This would allow for opening on left page of chapters
%% N.B.: Not fully working / fixed, left for now if someone wants to improve this component
%
% First option
%
% \makeatletter
% \renewcommand*\cleardoublepage{\clearpage\if@twoside
%        \ifodd\c@page \hbox{}\newpage\if@twocolumn\hbox{}%
%        \newpage\fi\fi\fi}
% \makeatother
%
% Other option
% This fixes the page to open chapters / parts on (i.e. not forced right)
% \csname @openrightfalse\endcsname

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% ~~~~ Bibliography

%% Definition of the bibliography and related packages
%% See biblatex background information for choices that could be made here.
% \usepackage[style=authoryear-comp,backend=biber,maxbibnames=10]{biblatex}
\usepackage[style=nature,backend=biber,doi=true,maxbibnames=30]{biblatex}

%% For optional bibliography per chapter
%\usepackage{chapterbib}
%\setlength\bibitemsep{1.5\itemsep}
%\renewcommand*{\nameyeardelim}{\addcomma\space}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% ~~~~ Tikz settings

%% Getting Tikz
\usepackage{tikzscale}
\usepackage{tikz}

%% Tikz libraries
\usetikzlibrary{shapes,arrows,chains}

%\usepackage{pgfplots}
%\pgfplotsset{compat=newest}
%\pgfplotsset{plot coordinates/math parser=false}
\newlength{\fwidth}
\colorlet{lcnorm}{black}

% Better enumeration
%\usepackage[inline]{enumitem}



%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% ~~~~ Page tweaking

%% Remove the marginpar
\setlength{\marginparwidth}{0pt}


% Layout settings:
\renewcommand{\headrulewidth}{1.5pt}% 1.5pt header rule


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% ~~~~ Figure tweaking

%% Small change to plot all figures with fbox, for better layout
\LetLtxMacro\latexincludegraphics\includegraphics % save the meaning of \includegraphics

% pass the image to \shadowbox
%\renewcommand{\includegraphics}[2][]{\fbox{\latexincludegraphics[#1]{#2}}}



%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% ~~~~ Subcript text

%% Change the behavior of subscript to textmode (without the amsmath spacing)
\begingroup\lccode`~=`!
\lowercase{\endgroup\def~}#1{_{\mathrm{#1}}}
\AtBeginDocument{\mathcode`!=\string"8000 }





%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% ~~~~ Table of Contents (TOC)
\makeatletter

\newcommand{\chaptoc}{
	\vspace{0.6cm}
	\startcontents[chaps]
	\begin{tcolorbox}[
		colframe=thumb\arabic{colorcounter},
		width=\linewidth,
		enhanced,
		top=10pt,
		bottom=10pt,
		nobeforeafter,
		outer arc=0pt,
		arc=0pt,
		boxrule=1.2pt,
		colback=white,
		overlay={
			\node[anchor=west,fill=white,inner xsep=6pt, text=thumb\arabic{colorcounter}]
			at ([xshift=10pt]frame.north west)
			{\textbf{Contents}};
		}
		]
		\printcontents[chaps]{}{1}{}
	\end{tcolorbox}
	\vspace{2cm}}



%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% ~~~~ Styling the Part

%% Make changes to the part so that the contents end up on the titlepages
\let\LaTeXStandardPart\part%
\newcommand{\unstarredpart@@noopt}[1]{%
	\unstarredpart@@opt[#1]{#1}%
}%

\newcommand{\unstarredpart@@opt}[2][]{%
%	\cleardoublepage% (For clearing content before!!) Original
        \clearpage% (For clearing content before!!!)
	\begingroup%
	\let\newpage\relax%
	\LaTeXStandardPart[#1]{#2}%
	\endgroup%
}%

\newcommand{\starredpart}[1]{%
	\LaTeXStandardPart*{#1}%
}%

\newcommand{\unstarredpart}{%
	\@ifnextchar[{\unstarredpart@@opt}{\unstarredpart@@noopt}%
}%

\renewcommand{\part}{%
	\@ifstar{\starredpart}{\unstarredpart}%
}%

\makeatother



%% Define the toc colors for the parts, and add the horizontal lines
\renewcommand{\cftpartfont}{\hypersetup{linkcolor=thumb\arabic{colorcounter}}}
\renewcommand{\cftpartpresnum}{\hypersetup{linkcolor=thumb\arabic{colorcounter}}}

\titlecontents{part}%
[0pt]{\color{thumb\arabic{colorcounter}}\bfseries\large\protect\addvspace{10pt}\titlerule[1pt]\addvspace{1.3ex}}
{}{\partname~}
{\hfill\contentspage}%
[\addvspace{0.7ex} {\titlerule[1pt]} \addvspace{5pt}]%

\renewcommand{\cftchapfont}{\bfseries\hypersetup{linkcolor=thumb\arabic{colorcounter}}}
\renewcommand{\cftchappagefont}{\bfseries\color{thumb\arabic{colorcounter}}}

\renewcommand{\thepart}{\color{thumb\arabic{colorcounter}}\Roman{part}} % Adjust the color of the part as well

\newcounter{thumbcounter}
\newcounter{colorcounter}