.travis.yml

# Use R
language: r
sudo: false
cache: packages
warnings_are_errors: false

env:
  global:
    - BIOC_USE_DEVEL="FALSE"  ## Use the current release version
    - _R_CHECK_FORCE_SUGGESTS_="FALSE"  ## Some suggested packages not
                                        ## available for r-oldrel

r:
 - oldrel
 - release
 - devel

addons:
  apt:
    packages:
      - libnlopt-dev

install:
  - R -e 'install.packages("devtools")'
  - R -e 'devtools::install_deps(dependencies = TRUE)'
  - R -e 'devtools::install_version("flexmix", "2.3-13")'
  # catch package installation issues sooner rather than later
  - R -e 'devtools::install_github("hms-dbmi/scde")'

# do not build vignettes...takes too long and times out on travis
script:
  - R CMD build --no-build-vignettes --no-manual .
  - R CMD check --no-build-vignettes --no-manual --timings *tar.gz

# we need to install BiocInstaller for testing Bioconductor packages
bioc_required: true

# only report coverage for the release version
after_success:
  - test $TRAVIS_R_VERSION_STRING = 'release' && Rscript -e 'covr::codecov()'
  
notifications:
  email:
    on_success: change
    on_failure: change