From 3d277e69021578beefac56fdbccd170e7dfe3b38 Mon Sep 17 00:00:00 2001 From: Zilong-Li Date: Sun, 14 Jan 2024 11:41:11 +0100 Subject: [PATCH] do not override cflags --- src/Makevars | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/Makevars b/src/Makevars index 15fb960..3b21c51 100644 --- a/src/Makevars +++ b/src/Makevars @@ -13,8 +13,8 @@ CXX=$(shell "R CMD config CXX") AR=$(shell "R CMD config AR") RANLIB=$(shell "R CMD config RANLIB") LDFLAGS=$(shell "R CMD config LDFLAGS") -CFLAGS=$(shell "R CMD config CFLAGS") -CPPFLAGS=$(shell "R CMD config CPPFLAGS") +# CFLAGS=$(shell "R CMD config CFLAGS") +# CPPFLAGS=$(shell "R CMD config CPPFLAGS") HTSLIB: (cd ${HTSLIB_DIR} && $(MAKE) -f Makefile.vcfppR libhts.a && cd ..)