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.gitignore
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FORECasT/FORECasT_read_counts/
inDelphi/
pearson_ccs.pkl
indelphi_pccs_del_features.pkl
indelphi_pccs_ins_features.pkl
*.png
*.pkl
FORECasT/train/Tijsterman_Analyser/
tmp_features_GAATGACTCCTATGGCTGATTGTCCGTCGACCGATGTCGGAGAGGCCCACAATTACATTACGGCTGTATCGCGGTCGTA_28063.txt
tmp_features_GAATGACTCCTATGGCTGATTGTCCGTCGACCGATGTCGGAGAGGCCCACAATTACATTACGGCTGTATCGCGGTCGTA_42341.txt
tmp_features_GAATGACTCCTATGGCTGATTGTCCGTCGACCGATGTCGGAGAGGCCCACAATTACATTACGGCTGTATCGCGGTCGTA_53950.txt
*.sbatch
*.html
*.pdf
plots/Oligo_38_In_Frame
*.iml
*.pyc
.idea/
FORECasT/shap_values_visualizations/summary_plots/results/D3/n_100/metadata.txt
FORECasT/shap_values_visualizations/summary_plots/results/D3/n_200/
FORECasT/config.py
FORECasT/kl_divs/metadata_kl_divs_plot.txt
FORECasT/candidate_samples/single_nucleotide_insertions_freq_50\+/
FORECasT/candidate_samples/large_deletions_freq_50\+/
FORECasT/candidate_samples/dinucleotide_insertions_most_freq/
FORECasT/debugging/
FORECasT/shap_values_visualizations/summary_plots/results/D3/n_1000/nsamples=1e05/hyperparameter tuning/
FORECasT/shap_values_visualizations/summary_plots/results/D3/n_1000/nsamples=2.5e04/hyperparameter tuning/
FORECasT/shap_values_visualizations/summary_plots/results/D3/n_1000/nsamples=4e04/hyperparameter tuning/
FORECasT/shap_values_visualizations/summary_plots/results/D3/n_1000/nsamples=7.5e04/hyperparameter tuning/
FORECasT/shap_values_visualizations/summary_plots/results/D3/n_1000/nsamples=auto/hyperparameter tuning/
FORECasT/candidate_samples/test_data/dinucleotide_insertions_most_freq/
FORECasT/candidate_samples/test_data/large_deletions_freq_50\+/
FORECasT/candidate_samples/test_data/single_nucleotide_insertions_freq_50\+/
FORECasT/candidate_samples/train_data/dinucleotide_insertions_most_freq/
FORECasT/candidate_samples/train_data/large_deletions_freq_50\+/
FORECasT/candidate_samples/train_data/single_nucleotide_insertions_freq_50\+/
FORECasT/kl_divs/
FORECasT/test/Tijsterman_Analyser/
Lindel/train_1.py
FORECasT/test_dels_ins.csv
FORECasT/train_dels_ins.csv
FORECasT/test_ins.csv
FORECasT/train_ins.csv