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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(getDynamics)
export(getEnhancers)
export(getSE)
export(getTargets)
export(normalize)
export(plotSummary)
export(saveFiles)
import(BSgenome)
import(TxDb.Hsapiens.UCSC.hg19.knownGene)
import(TxDb.Hsapiens.UCSC.hg38.knownGene)
import(TxDb.Mmusculus.UCSC.mm10.knownGene)
import(TxDb.Mmusculus.UCSC.mm9.knownGene)
import(parallel)
import(randomForest)
importFrom(BSgenome.Hsapiens.UCSC.hg19,BSgenome.Hsapiens.UCSC.hg19)
importFrom(BSgenome.Hsapiens.UCSC.hg38,BSgenome.Hsapiens.UCSC.hg38)
importFrom(BSgenome.Mmusculus.UCSC.mm10,BSgenome.Mmusculus.UCSC.mm10)
importFrom(BSgenome.Mmusculus.UCSC.mm9,BSgenome.Mmusculus.UCSC.mm9)
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicAlignments,summarizeOverlaps)
importFrom(GenomicFeatures,genes)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,distance)
importFrom(GenomicRanges,elementMetadata)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,granges)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,merge)
importFrom(GenomicRanges,nearest)
importFrom(GenomicRanges,promoters)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,resize)
importFrom(GenomicRanges,seqinfo)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,strand)
importFrom(GenomicRanges,tileGenome)
importFrom(GenomicRanges,width)
importFrom(IRanges,"%within%")
importFrom(IRanges,IRanges)
importFrom(IRanges,subsetByOverlaps)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,scanBamHeader)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(S4Vectors,values)
importFrom(bamsignals,bamProfile)
importFrom(dplyr,filter)
importFrom(dplyr,lag)
importFrom(dplyr,mutate)
importFrom(dplyr,setdiff)
importFrom(ggplot2,aes)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guides)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,hsv)
importFrom(magrittr,"%>%")
importFrom(magrittr,extract)
importFrom(matrixStats,colMaxs)
importFrom(matrixStats,colMedians)
importFrom(matrixStats,rowVars)
importFrom(preprocessCore,normalize.quantiles.use.target)
importFrom(reshape2,melt)
importFrom(rtracklayer,export)
importFrom(stats,knots)
importFrom(stats,ks.test)
importFrom(stats,predict)
importFrom(stats,runif)
importFrom(utils,combn)
importFrom(utils,getFromNamespace)
importFrom(utils,read.table)
importFrom(utils,write.table)