diff --git a/docs/_site/atom.xml b/docs/_site/atom.xml
index 507a406..bb21cc6 100644
--- a/docs/_site/atom.xml
+++ b/docs/_site/atom.xml
@@ -4,7 +4,7 @@
  <title>Otic reprogramming</title>
  <link href="https://alexthiery.github.io/otic-reprogramminghttps://alexthiery.github.io/otic-reprogramming/atom.xml" rel="self"/>
  <link href="https://alexthiery.github.io/otic-reprogramminghttps://alexthiery.github.io/otic-reprogramming/"/>
- <updated>2023-03-09T06:53:39-06:00</updated>
+ <updated>2023-05-12T06:19:56-05:00</updated>
  <id>https://alexthiery.github.io/otic-reprogramming</id>
  <author>
    <name>Alex Thiery</name>
diff --git a/docs/_site/downstream/lmx1a_downstream/index.html b/docs/_site/downstream/lmx1a_downstream/index.html
index dc0d7d3..b79e363 100644
--- a/docs/_site/downstream/lmx1a_downstream/index.html
+++ b/docs/_site/downstream/lmx1a_downstream/index.html
@@ -505,7 +505,10 @@ <h3 id="r-analysis-pipeline">R analysis pipeline</h3>
 </br>
 <p>Subset differentially expressed transcription factors based on GO terms ('GO:0003700', 'GO:0043565', 'GO:0000981').</p>
 <div class="language-R highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="c1"># Get biomart GO annotations for TFs</span><span class="w">
-</span><span class="n">ensembl</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">useMart</span><span class="p">(</span><span class="s2">"ensembl"</span><span class="p">,</span><span class="n">dataset</span><span class="o">=</span><span class="s2">"ggallus_gene_ensembl"</span><span class="p">)</span><span class="w">
+</span><span class="n">ensembl</span><span class="w"> </span><span class="o">&lt;-</span><span class="w"> </span><span class="n">useEnsembl</span><span class="p">(</span><span class="n">biomart</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="s1">'ensembl'</span><span class="p">,</span><span class="w"> 
+                      </span><span class="n">dataset</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="s1">'ggallus_gene_ensembl'</span><span class="p">,</span><span class="w">
+                      </span><span class="n">version</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="m">104</span><span class="p">)</span><span class="w">
+                      
 </span><span class="n">TF_subset</span><span class="w"> </span><span class="o">&lt;-</span><span class="w"> </span><span class="n">getBM</span><span class="p">(</span><span class="n">attributes</span><span class="o">=</span><span class="nf">c</span><span class="p">(</span><span class="s2">"ensembl_gene_id"</span><span class="p">,</span><span class="w"> </span><span class="s2">"go_id"</span><span class="p">,</span><span class="w"> </span><span class="s2">"name_1006"</span><span class="p">,</span><span class="w"> </span><span class="s2">"namespace_1003"</span><span class="p">),</span><span class="w">
                    </span><span class="n">filters</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="s1">'ensembl_gene_id'</span><span class="p">,</span><span class="w">
                    </span><span class="n">values</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">rownames</span><span class="p">(</span><span class="n">res_sub</span><span class="p">),</span><span class="w">
diff --git a/docs/_site/downstream/sox8_downstream/index.html b/docs/_site/downstream/sox8_downstream/index.html
index 439a904..0f7d419 100644
--- a/docs/_site/downstream/sox8_downstream/index.html
+++ b/docs/_site/downstream/sox8_downstream/index.html
@@ -514,7 +514,10 @@ <h3 id="r-analysis-pipeline">R analysis pipeline</h3>
 </br>
 <p>Subset differentially expressed transcription factors based on GO terms ('GO:0003700', 'GO:0043565', 'GO:0000981').</p>
 <div class="language-R highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="c1"># Get biomart GO annotations for TFs</span><span class="w">
-</span><span class="n">ensembl</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">useMart</span><span class="p">(</span><span class="s2">"ensembl"</span><span class="p">,</span><span class="n">dataset</span><span class="o">=</span><span class="s2">"ggallus_gene_ensembl"</span><span class="p">)</span><span class="w">
+</span><span class="n">ensembl</span><span class="w"> </span><span class="o">&lt;-</span><span class="w"> </span><span class="n">useEnsembl</span><span class="p">(</span><span class="n">biomart</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="s1">'ensembl'</span><span class="p">,</span><span class="w"> 
+                      </span><span class="n">dataset</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="s1">'ggallus_gene_ensembl'</span><span class="p">,</span><span class="w">
+                      </span><span class="n">version</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="m">104</span><span class="p">)</span><span class="w">
+
 </span><span class="n">TF_subset</span><span class="w"> </span><span class="o">&lt;-</span><span class="w"> </span><span class="n">getBM</span><span class="p">(</span><span class="n">attributes</span><span class="o">=</span><span class="nf">c</span><span class="p">(</span><span class="s2">"ensembl_gene_id"</span><span class="p">,</span><span class="w"> </span><span class="s2">"go_id"</span><span class="p">,</span><span class="w"> </span><span class="s2">"name_1006"</span><span class="p">,</span><span class="w"> </span><span class="s2">"namespace_1003"</span><span class="p">),</span><span class="w">
                    </span><span class="n">filters</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="s1">'ensembl_gene_id'</span><span class="p">,</span><span class="w">
                    </span><span class="n">values</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">rownames</span><span class="p">(</span><span class="n">res_sub</span><span class="p">),</span><span class="w">