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Better error message for input MSA #100

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lczech opened this issue Jul 17, 2020 · 0 comments
Open

Better error message for input MSA #100

lczech opened this issue Jul 17, 2020 · 0 comments

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@lczech
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lczech commented Jul 17, 2020

Given a FASTA file with unaligned sequences, when calling with --msa file.fasta, without specifying --msa-format FASTA, the error message is

ERROR: Error loading MSA: cannot parse any format supported by RAxML-NG!
Please re-run with --msa-format <FORMAT> and/or --log debug to get more information.

While of course unaligned sequences are not supported, the error message could be better here. Ideally, it should be the same as when actually specifying --msa-format FASTA, which reports

ERROR: Error loading MSA: FASTA file does not contain equal size sequences

for the same unaligned data.

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