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Update scikit-image / Fiber Segmentation #1162

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srivarra opened this issue Oct 4, 2024 · 0 comments
Open

Update scikit-image / Fiber Segmentation #1162

srivarra opened this issue Oct 4, 2024 · 0 comments
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dependencies Pull requests that update a dependency file enhancement New feature or request

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@srivarra
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srivarra commented Oct 4, 2024

Scikit-image was pinned to v0.19.3 / v0.19.2 in #1060 because of a reimplementation of the frangi filter. This was over a year ago and causes the following issues:

  • bounds the current versions of Python Ark can support
  • bounds the current version of NumPy
  • forces compilation of scikit image each time you create a new environment (several minutes each time)
  • Doesn't allow us to use newer features in skimage if necessary later down the line.

We should find a way to get something comparable to this with the newer implementation.

@srivarra srivarra added this to the v0.8.0 Release milestone Oct 4, 2024
@srivarra srivarra changed the title Update scikit-image Update scikit-image / Fiber Segmentation Oct 4, 2024
@srivarra srivarra added enhancement New feature or request dependencies Pull requests that update a dependency file labels Oct 4, 2024
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Labels
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