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Pre-installing tools in the tool_conf via conda #584

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ebolyen opened this issue Jun 10, 2021 · 0 comments
Open

Pre-installing tools in the tool_conf via conda #584

ebolyen opened this issue Jun 10, 2021 · 0 comments

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@ebolyen
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ebolyen commented Jun 10, 2021

Hello,

I am trying to streamline a galaxy flavor for QIIME 2 (q2galaxy), and would like to pre-install the tools with conda. After a bunch of experimentation, I've found the following almost works:

# future: FROM bgruening/galaxy-stable:latest
FROM quay.io/qiime2/galaxy-qiime2

ENV \
GALAXY_CONFIG_TOOL_CONFIG_FILE=/qiime2_tools/qiime2_tool_conf.xml \
GALAXY_CONFIG_CONDA_ENSURE_CHANNELS=https://packages.qiime2.org/qiime2/latest/tested/,iuc,conda-forge,bioconda,defaults

COPY tools/ /qiime2_tools/
COPY qiime2_tool_conf.xml /qiime2_tools/

RUN /usr/bin/startup \
    & /tool_deps/_conda/bin/galaxy-wait -g http://127.0.0.1 \
      && sleep 60 \
      && /tool_deps/_conda/bin/install_tool_deps -v \
         -t $GALAXY_CONFIG_TOOL_CONFIG_FILE \
         -g http://127.0.0.1 \
         -u $GALAXY_DEFAULT_ADMIN_EMAIL \
	 -p $GALAXY_DEFAULT_ADMIN_PASSWORD

(Note our base image is still derived from docker-galaxy-stable, just compiled on a fork of galaxy with some custom datatypes, hopefully this won't be necessary in the future)

The very last RUN command is able to wait for the galaxy server to spin up, waits a bit longer for the admin user to be created, and then attempts to install everything in the tool config.

This very nearly completes, but ends with a 403:

stdout showing my plight 
§ sudo docker build -t test:q2galaxy .
Sending build context to Docker daemon  6.935MB
Step 1/5 : FROM quay.io/qiime2/galaxy-qiime2
 ---> b76b8728646e
Step 2/5 : ENV GALAXY_CONFIG_TOOL_CONFIG_FILE=/qiime2_tools/qiime2_tool_conf.xml GALAXY_CONFIG_CONDA_ENSURE_CHANNELS=https://packages.qiim
e2.org/qiime2/latest/tested/,iuc,conda-forge,bioconda,defaults
 ---> Running in c3bd9ea2f1ad
Removing intermediate container c3bd9ea2f1ad
 ---> 6a8614b84138
Step 3/5 : COPY tools/ /qiime2_tools/
 ---> 489302925867
Step 4/5 : COPY qiime2_tool_conf.xml /qiime2_tools/
 ---> ac1cfe18fe43
Step 5/5 : RUN /usr/bin/startup     & /tool_deps/_conda/bin/galaxy-wait -g http://127.0.0.1       && sleep 60       && /tool_deps/_conda/b
in/install_tool_deps -v          -t $GALAXY_CONFIG_TOOL_CONFIG_FILE          -g http://127.0.0.1          -u $GALAXY_DEFAULT_ADMIN_EMAIL
-p $GALAXY_DEFAULT_ADMIN_PASSWORD
 ---> Running in 696e15f9c875
Enable Galaxy reports authentification
Checking /export...
Disable Galaxy Interactive Environments. Start with --privileged to enable IE's.
Starting postgres
postgresql: started
Checking if database is up and running
Database connected
Starting cron
cron: started
Starting ProFTP
proftpd: started
Starting Galaxy reports webapp
reports: started
Starting nodejs
galaxy:galaxy_nodejs_proxy: started
Starting condor
condor: started
Starting slurmctld
Starting slurmd
Creating admin user admin with key fakekey and password password if not existing
==> /home/galaxy/logs/handler0.log <==
galaxy.workflow.scheduling_manager INFO 2021-06-09 23:20:06,975 No workflow schedulers plugin config file defined, using default scheduler
.
galaxy.workflow.scheduling_manager DEBUG 2021-06-09 23:20:06,975 Starting workflow schedulers
galaxy.queue_worker INFO 2021-06-09 23:20:06,981 Binding and starting galaxy control worker for handler0
galaxy.queue_worker INFO 2021-06-09 23:20:06,991 Queuing async task rebuild_toolbox_search_index for handler0.
galaxy.model.database_heartbeat DEBUG 2021-06-09 23:20:07,004 handler0 is config watcher
galaxy.util.watcher DEBUG 2021-06-09 23:20:07,006 Watching for changes in directory (recursively): /galaxy-central/tool-data
galaxy.app INFO 2021-06-09 23:20:07,043 Galaxy app startup finished (4708.255 ms)
galaxy.web_stack INFO 2021-06-09 23:20:07,043 Galaxy server instance 'handler0' is running
galaxy.queue_worker INFO 2021-06-09 23:20:07,044 Instance 'handler0' received 'rebuild_toolbox_search_index' task, executing now.
galaxy.queue_worker DEBUG 2021-06-09 23:20:07,045 App is not a webapp, not building a search index

==> /home/galaxy/logs/handler1.log <==
galaxy.workflow.scheduling_manager INFO 2021-06-09 23:20:08,528 No workflow schedulers plugin config file defined, using default scheduler
.
galaxy.workflow.scheduling_manager DEBUG 2021-06-09 23:20:08,528 Starting workflow schedulers
galaxy.queue_worker INFO 2021-06-09 23:20:08,541 Binding and starting galaxy control worker for handler1
galaxy.queue_worker INFO 2021-06-09 23:20:08,552 Queuing async task rebuild_toolbox_search_index for handler1.
galaxy.model.database_heartbeat DEBUG 2021-06-09 23:20:08,566 handler1 is config watcher
galaxy.util.watcher DEBUG 2021-06-09 23:20:08,571 Watching for changes in directory (recursively): /galaxy-central/tool-data
galaxy.app INFO 2021-06-09 23:20:08,586 Galaxy app startup finished (2226.142 ms)
galaxy.web_stack INFO 2021-06-09 23:20:08,586 Galaxy server instance 'handler1' is running
galaxy.queue_worker INFO 2021-06-09 23:20:08,588 Instance 'handler1' received 'rebuild_toolbox_search_index' task, executing now.
galaxy.queue_worker DEBUG 2021-06-09 23:20:08,588 App is not a webapp, not building a search index

==> /home/galaxy/logs/reports.log <==
galaxy.web.framework.base DEBUG 2021-06-09 23:20:10,769 Enabling 'tools' controller, class: Tools
galaxy.web.framework.base DEBUG 2021-06-09 23:20:10,771 Enabling 'users' controller, class: Users
galaxy.web.framework.base DEBUG 2021-06-09 23:20:10,774 Enabling 'workflows' controller, class: Workflows
galaxy.webapps.util DEBUG 2021-06-09 23:20:10,775 Enabling 'paste.httpexceptions' middleware
galaxy.webapps.util DEBUG 2021-06-09 23:20:10,775 Enabling 'RecursiveMiddleware' middleware
galaxy.webapps.util DEBUG 2021-06-09 23:20:10,777 Enabling 'ErrorMiddleware' middleware
galaxy.webapps.util DEBUG 2021-06-09 23:20:10,778 Enabling 'TransLogger' middleware
galaxy.webapps.util DEBUG 2021-06-09 23:20:10,779 Enabling 'XForwardedHostMiddleware' middleware
Starting server in PID 788.
serving on http://127.0.0.1:9001

==> /home/galaxy/logs/slurmctld.log <==
[2021-06-09T23:20:35.303] error: NOTE: Trying backup state save file. Triggers may be lost!
[2021-06-09T23:20:35.303] No trigger state file (/tmp/slurm/trigger_state.old) to recover
[2021-06-09T23:20:35.303] _preserve_plugins: backup_controller not specified
[2021-06-09T23:20:35.303] Reinitializing job accounting state
[2021-06-09T23:20:35.303] cons_res: select_p_reconfigure
[2021-06-09T23:20:35.303] cons_res: select_p_node_init
[2021-06-09T23:20:35.303] cons_res: preparing for 1 partitions
[2021-06-09T23:20:35.303] Running as primary controller
[2021-06-09T23:20:35.303] No parameter for mcs plugin, default values set
[2021-06-09T23:20:35.303] mcs: MCSParameters = (null). ondemand set.

==> /home/galaxy/logs/slurmd.log <==
[2021-06-09T23:20:35.395] error: Domain socket directory /var/spool/slurmd: No such file or directory
[2021-06-09T23:20:35.415] error: Node configuration differs from hardware: Procs=12:12(hw) Boards=1:1(hw) SocketsPerBoard=12:1(hw) CoresPe
rSocket=1:6(hw) ThreadsPerCore=1:2(hw)
[2021-06-09T23:20:35.415] Message aggregation disabled
[2021-06-09T23:20:35.416] slurmd version 17.11.2 started
[2021-06-09T23:20:35.417] slurmd started on Wed, 09 Jun 2021 23:20:35 +0000
[2021-06-09T23:20:35.417] CPUs=12 Boards=1 Sockets=12 Cores=1 Threads=1 Memory=31915 TmpDisk=773392 Uptime=1405833 CPUSpecList=(null) Feat
uresAvail=(null) FeaturesActive=(null)

==> /home/galaxy/logs/uwsgi.log <==
galaxy.web_stack DEBUG 2021-06-09 23:20:09,501 [p:805,w:2,m:0] [MainThread] Calling postfork function: <function postfork_setup at 0x7f7c7
2c71ae8>
galaxy.web_stack INFO 2021-06-09 23:20:09,501 [p:805,w:2,m:0] [MainThread] Galaxy server instance 'main.web.2' is running
galaxy.queue_worker INFO 2021-06-09 23:20:09,502 [p:805,w:2,m:0] [Thread-1] Instance 'main.web.2' received 'rebuild_toolbox_search_index'
task, executing now.
galaxy.tools.search DEBUG 2021-06-09 23:20:09,502 [p:805,w:2,m:0] [Thread-1] Starting to build toolbox index.
127.0.0.1 - - [09/Jun/2021:23:20:09 +0000] "GET /api/version HTTP/1.1" 200 - "-" "python-requests/2.22.0"
[pid: 802|app: 0|req: 1/1] 127.0.0.1 () {36 vars in 433 bytes} [Wed Jun  9 23:20:09 2021] GET /api/version => generated 39 bytes in 18 mse
cs (HTTP/1.1 200) 3 headers in 139 bytes (1 switches on core 0)
galaxy.tools.search DEBUG 2021-06-09 23:20:09,863 [p:805,w:2,m:0] [Thread-1] Toolbox index finished (361.193 ms)
galaxy.queue_worker INFO 2021-06-09 23:20:10,504 [p:802,w:1,m:0] [Thread-1] Instance 'main.web.1' received 'rebuild_toolbox_search_index'
task, executing now.
galaxy.tools.search DEBUG 2021-06-09 23:20:10,504 [p:802,w:1,m:0] [Thread-1] Starting to build toolbox index.
galaxy.tools.search DEBUG 2021-06-09 23:20:10,516 [p:802,w:1,m:0] [Thread-1] Toolbox index finished (11.795 ms)

==> /home/galaxy/logs/slurmctld.log <==
[2021-06-09T23:20:38.306] SchedulerParameters=default_queue_depth=100,max_rpc_cnt=0,max_sched_time=2,partition_job_depth=0,sched_max_job_s
tart=0,sched_min_interval=2

==> /home/galaxy/logs/handler0.log <==
galaxy.model.database_heartbeat DEBUG 2021-06-09 23:21:07,011 handler0 is not config watcher

==> /home/galaxy/logs/handler1.log <==
galaxy.model.database_heartbeat DEBUG 2021-06-09 23:21:08,576 handler1 is not config watcher
INFO:root:tool_conf xml found, parsing..
INFO:root:Installing tool dependencies for upload1 from: /galaxy-central/tools/data_source/upload.xml
DEBUG:urllib3.connectionpool:Starting new HTTP connection (1): 127.0.0.1:80

==> /home/galaxy/logs/uwsgi.log <==
galaxy.auth.providers.localdb DEBUG 2021-06-09 23:21:09,746 [p:802,w:1,m:0] [uWSGIWorker1Core1] User: [email protected], LOCALDB: True
127.0.0.1 - - [09/Jun/2021:23:21:09 +0000] "GET /api/authenticate/baseauth HTTP/1.1" 200 - "-" "python-requests/2.22.0"
[pid: 802|app: 0|req: 2/2] 127.0.0.1 () {40 vars in 572 bytes} [Wed Jun  9 23:21:09 2021] GET /api/authenticate/baseauth => generated 22 b
ytes in 7 msecs (HTTP/1.1 200) 3 headers in 139 bytes (1 switches on core 1)
DEBUG:urllib3.connectionpool:http://127.0.0.1:80 "GET /api/authenticate/baseauth HTTP/1.1" 200 None
DEBUG:urllib3.connectionpool:Starting new HTTP connection (1): 127.0.0.1:80
127.0.0.1 - - [09/Jun/2021:23:21:09 +0000] "POST /api/tools/upload1/install_dependencies?key=fakekey HTTP/1.1" 200 - "-" "python-requests/
2.22.0"
[pid: 802|app: 0|req: 3/3] 127.0.0.1 () {40 vars in 589 bytes} [Wed Jun  9 23:21:09 2021] POST /api/tools/upload1/install_dependencies?key
=fakekey => generated 2 bytes in 4 msecs (HTTP/1.1 200) 3 headers in 139 bytes (1 switches on core 2)
DEBUG:urllib3.connectionpool:http://127.0.0.1:80 "POST /api/tools/upload1/install_dependencies?key=fakekey HTTP/1.1" 200 None
INFO:root:Installing tool dependencies for qiime2_tools_export from: /qiime2_tools/suite_qiime2_tools/qiime2_tools_export.xml
DEBUG:urllib3.connectionpool:Starting new HTTP connection (1): 127.0.0.1:80
galaxy.tool_util.deps.conda_util DEBUG 2021-06-09 23:21:09,776 [p:802,w:1,m:0] [uWSGIWorker1Core3] Executing command: /export/tool_deps/_c
onda/bin/conda create -y --quiet --override-channels --channel https://packages.qiime2.org/qiime2/latest/tested/ --channel iuc --channel c
onda-forge --channel bioconda --channel defaults --name mulled-v1-f2722a6add311aef8b463d1eafe3f8b312234cb34b14c6659654b36efafb897e q2-vsea
rch=2021.4.0 q2-types=2021.4.0 q2-taxa=2021.4.0 q2-sample-classifier=2021.4.0 q2-quality-filter=2021.4.0 q2-quality-control=2021.4.0 q2-ph
ylogeny=2021.4.0 q2-metadata=2021.4.0 q2-longitudinal=2021.4.0 q2-gneiss=2021.4.0 q2-fragment-insertion=2021.4.0 q2-feature-table=2021.4.0
 q2-feature-classifier=2021.4.0 q2-emperor=2021.4.0 q2-diversity=2021.4.0 q2-diversity-lib=2021.4.0 q2-demux=2021.4.0 q2-deblur=2021.4.0 q
2-dada2=2021.4.0 q2-cutadapt=2021.4.0 q2-composition=2021.4.0 q2-alignment=2021.4.0 biom-format=2.1.10 click=7.1.2 python=3.8.8 ld_impl_li
nux-64=2.35.1 libffi=3.3 libgcc-ng=9.3.0 _libgcc_mutex=0.1 _openmp_mutex=4.5 libgomp=9.3.0 libstdcxx-ng=9.3.0 ncurses=6.2 openssl=1.1.1k c
a-certificates=2020.12.5 readline=8.1 sqlite=3.35.4 zlib=1.2.11 tk=8.6.10 xz=5.2.5 pip=21.0.1 setuptools=49.6.0 certifi=2020.12.5 python_a
bi=3.8 wheel=0.36.2 future=0.18.2 h5py=3.2.1 cached-property=1.5.2 cached_property=1.5.2 hdf5=1.10.6 libcurl=7.76.1 krb5=1.17.2 libedit=3.
1.20191231 libnghttp2=1.43.0 c-ares=1.17.1 libev=4.33 libssh2=1.9.0 libgfortran-ng=9.3.0 libgfortran5=9.3.0 numpy=1.20.2 libblas=3.9.0 lib
openblas=0.3.12 libcblas=3.9.0 liblapack=3.9.0 pandas=1.2.4 python-dateutil=2.8.1 six=1.15.0 pytz=2021.1 scipy=1.6.2 pyyaml=5.4.1 yaml=0.2
.5 ipywidgets=7.6.3 ipykernel=5.5.3 ipython=7.22.0 backcall=0.2.0 decorator=4.4.2 jedi=0.18.0 parso=0.8.2 pexpect=4.8.0 ptyprocess=0.7.0 p
ickleshare=0.7.5 prompt-toolkit=3.0.18 wcwidth=0.2.5 backports.functools_lru_cache=1.6.4 backports=1.0 pygments=2.8.1 traitlets=5.0.5 ipyt
hon_genutils=0.2.0 jupyter_client=6.1.12 jupyter_core=4.7.1 pyzmq=22.0.3 libsodium=1.0.18 zeromq=4.3.4 tornado=6.1 jupyterlab_widgets=1.0.
0 nbformat=5.1.3 jsonschema=3.2.0 attrs=20.3.0 importlib-metadata=3.10.1 zipp=3.4.1 pyrsistent=0.17.3 widgetsnbextension=3.5.1 notebook=6.
3.0 argon2-cffi=20.1.0 cffi=1.14.5 pycparser=2.20 jinja2=2.11.3 markupsafe=1.1.1 nbconvert=6.0.7 bleach=3.3.0 packaging=20.9 pyparsing=2.4
.7 webencodings=0.5.1 defusedxml=0.7.1 entrypoints=0.3 jupyterlab_pygments=0.1.2 mistune=0.8.4 nbclient=0.5.3 async_generator=1.10 nest-as
yncio=1.5.1 pandoc=2.12 pandocfilters=1.4.2 testpath=0.4.4 prometheus_client=0.10.1 send2trash=1.5.0 terminado=0.9.4 blas=1.1 openblas=0.3
.12 ijson=3.1.3 qiime2=2021.4.0 bibtexparser=1.1.0 networkx=2.5.1 tzlocal=2.1 scikit-bio=0.5.6 cachecontrol=0.12.6 msgpack-python=1.0.2 re
quests=2.25.1 chardet=4.0.0 idna=2.10 urllib3=1.26.4 brotlipy=0.7.0 cryptography=3.4.7 pyopenssl=20.0.1 pysocks=1.7.1 hdmedians=0.14.2 cyt
hon=0.29.23 lockfile=0.12.2 matplotlib-base=3.4.1 cycler=0.10.0 freetype=2.10.4 libpng=1.6.37 kiwisolver=1.3.1 pillow=8.1.2 jpeg=9d lcms2=
2.12 libtiff=4.2.0 libwebp-base=1.2.0 zstd=1.4.9 lz4-c=1.9.3 olefile=0.46 openjpeg=2.4.0 natsort=7.1.1 pytest=6.2.3 iniconfig=1.1.1 more-i
tertools=8.7.0 pluggy=0.13.1 py=1.10.0 toml=0.10.2 scikit-learn=0.24.1 joblib=1.0.1 threadpoolctl=2.1.0 q2templates=2021.4.0 seaborn=0.11.
1 seaborn-base=0.11.1 statsmodels=0.12.2 patsy=0.5.1 vsearch=2.7.0 libgcc=7.2.0 nodejs=15.14.0 icu=68.1 libuv=1.41.0 fastcluster=1.1.26 bl
ast=2.11.0 bzip2=1.0.8 curl=7.76.1 entrez-direct=13.9 perl=5.26.2 perl-html-parser=3.72 perl-html-tagset=3.20 perl-xsloader=0.24 perl-html
-tree=5.07 perl-carp=1.38 perl-exporter=5.72 perl-extutils-makemaker=7.36 perl-http-cookies=6.04 perl-http-date=6.02 perl-time-local=1.28
perl-constant=1.33 perl-parent=0.236 perl-http-message=6.18 perl-base=2.23 perl-compress-raw-zlib=2.087 perl-encode=2.88 perl-encode-local
e=1.05 perl-io-html=1.001 perl-lwp-mediatypes=6.04 perl-mime-base64=3.15 perl-storable=3.15 perl-uri=1.76 perl-business-isbn=3.004 perl-bu
siness-isbn-data=20140910.003 perl-data-dumper=2.173 perl-http-negotiate=6.01 perl-io-socket-ssl=2.066 perl-net-ssleay=1.88 perl-lwp-proto
col-https=6.07 perl-libwww-perl=6.39 perl-digest-md5=2.55 perl-file-listing=6.04 perl-http-daemon=6.01 perl-net-http=6.19 perl-ntlm=1.09 p
erl-digest-hmac=1.03 perl-try-tiny=0.30 perl-www-robotrules=6.02 perl-mozilla-ca=20180117 perl-test-requiresinternet=0.05 perl-socket=2.02
7 perl-xml-simple=2.25 perl-xml-namespacesupport=1.12 perl-xml-sax=1.02 perl-file-temp=0.2304 perl-app-cpanminus=1.7044 perl-file-path=2.1
6 perl-xml-sax-base=1.09 perl-xml-sax-expat=0.51 perl-xml-parser=2.44_01 expat=2.3.0 pcre=8.44 perl-archive-tar=2.32 perl-io-compress=2.08
7 perl-compress-raw-bzip2=2.087 perl-scalar-list-utils=1.52 perl-io-zlib=1.10 perl-pathtools=3.75 perl-json=4.02 perl-json-xs=2.34 perl-co
mmon-sense=3.74 perl-types-serialiser=1.0 perl-list-moreutils=0.428 perl-exporter-tiny=1.002001 perl-list-moreutils-xs=0.428 bowtie2=2.4.2
 tbb=2020.2 samtools=1.12 htslib=1.12 libdeflate=1.7 fasttree=2.1.10 iqtree=2.1.2 mafft=7.475 raxml=8.2.12 matplotlib=3.4.1 pyqt=5.12.3 py
qt-impl=5.12.3 dbus=1.13.6 glib=2.68.1 gettext=0.19.8.1 glib-tools=2.68.1 libglib=2.68.1 libiconv=1.16 pyqt5-sip=4.19.18 qt=5.12.9 fontcon
fig=2.13.1 libuuid=2.32.1 libxml2=2.9.10 gst-plugins-base=1.18.4 alsa-lib=1.2.3 gstreamer=1.18.4 libopus=1.3.1 libvorbis=1.3.7 libogg=1.3.
4 libclang=11.1.0 libllvm11=11.1.0 libevent=2.1.10 libpq=13.1 libxcb=1.13 pthread-stubs=0.4 xorg-libxau=1.0.9 xorg-libxdmcp=1.1.3 libxkbco
mmon=1.0.3 mysql-libs=8.0.23 mysql-common=8.0.23 nspr=4.30 nss=3.64 pyqtchart=5.12 pyqtwebengine=5.12.1 bokeh=2.3.1 typing_extensions=3.7.
4.3 gneiss=0.4.6 nose=1.3.7 openjdk=11.0.1 sepp=4.3.10 dendropy=4.5.2 hmmer=3.1b2 emperor=1.0.3 psutil=5.8.0 unifrac=0.20.2 lz4=3.1.3 r-ve
gan=2.5_7 r-base=4.0.3 _r-mutex=1.0.1 bwidget=1.9.14 cairo=1.16.0 pixman=0.40.0 xorg-libice=1.0.10 xorg-libsm=1.2.3 xorg-libx11=1.7.0 xorg
-kbproto=1.0.7 xorg-xproto=7.0.31 xorg-libxext=1.3.4 xorg-xextproto=7.3.0 xorg-libxrender=0.9.10 xorg-renderproto=0.11.1 gcc_linux-64=9.3.
0 binutils_linux-64=2.35 binutils_impl_linux-64=2.35.1 sysroot_linux-64=2.12 kernel-headers_linux-64=2.6.32 gcc_impl_linux-64=9.3.0 libgcc
-devel_linux-64=9.3.0 gfortran_linux-64=9.3.0 gfortran_impl_linux-64=9.3.0 gsl=2.6 gxx_linux-64=9.3.0 gxx_impl_linux-64=9.3.0 libstdcxx-de
vel_linux-64=9.3.0 make=4.3 pango=1.48.4 fonts-conda-ecosystem=1 fonts-conda-forge=1 font-ttf-dejavu-sans-mono=2.37 font-ttf-inconsolata=3
.000 font-ttf-source-code-pro=2.038 font-ttf-ubuntu=0.83 fribidi=1.0.10 harfbuzz=2.8.0 graphite2=1.3.13 pcre2=10.36 sed=4.8 tktable=2.10 x
org-libxt=1.2.1 r-cluster=2.1.1 r-lattice=0.20_41 r-mass=7.3_53.1 r-mgcv=1.8_34 r-matrix=1.3_2 r-nlme=3.1_152 r-permute=0.9_5 deblur=1.1.0
 sortmerna=2.0 bioconductor-dada2=1.18.0 bioconductor-biocgenerics=0.36.0 bioconductor-biostrings=2.58.0 bioconductor-iranges=2.24.1 bioco
nductor-s4vectors=0.28.1 bioconductor-xvector=0.30.0 bioconductor-zlibbioc=1.36.0 r-crayon=1.4.1 bioconductor-shortread=1.48.0 bioconducto
r-biobase=2.50.0 bioconductor-biocparallel=1.24.1 r-bh=1.75.0_0 r-futile.logger=1.4.3 r-futile.options=1.0.1 r-lambda.r=1.2.4 r-formatr=1.
9 r-snow=0.4_3 bioconductor-genomeinfodb=1.26.4 bioconductor-genomeinfodbdata=1.2.4 r-rcurl=1.98_1.3 r-bitops=1.0_6 bioconductor-genomical
ignments=1.26.0 bioconductor-genomicranges=1.42.0 bioconductor-rsamtools=2.6.0 bioconductor-rhtslib=1.22.0 bioconductor-summarizedexperime
nt=1.20.0 bioconductor-delayedarray=0.16.3 bioconductor-matrixgenerics=1.2.1 r-matrixstats=0.58.0 r-hwriter=1.3.2 r-latticeextra=0.6_29 r-
jpeg=0.1_8.1 r-png=0.1_7 r-rcolorbrewer=1.1_2 r-ggplot2=3.3.3 r-digest=0.6.27 r-glue=1.4.2 r-gtable=0.3.0 r-isoband=0.2.4 r-rcpp=1.0.6 r-t
estthat=3.0.2 r-brio=1.1.1 r-callr=3.6.0 r-processx=3.5.1 r-ps=1.6.0 r-r6=2.5.0 r-cli=2.4.0 r-assertthat=0.2.1 r-fansi=0.4.2 r-desc=1.3.0
r-rprojroot=2.0.2 r-backports=1.2.1 r-ellipsis=0.3.1 r-rlang=0.4.10 r-evaluate=0.14 r-jsonlite=1.7.2 r-lifecycle=1.0.0 r-magrittr=2.0.1 r-
pkgload=1.2.1 r-rstudioapi=0.13 r-withr=2.4.2 r-praise=1.0.0 r-waldo=0.2.5 r-diffobj=0.3.3 r-rematch2=2.1.2 r-tibble=3.1.1 r-pillar=1.6.0
r-utf8=1.2.1 r-vctrs=0.3.7 r-zeallot=0.1.0 r-pkgconfig=2.0.3 r-scales=1.1.1 r-farver=2.1.0 r-labeling=0.4.2 r-munsell=0.5.0 r-colorspace=2
.0_0 r-viridislite=0.4.0 r-rcppparallel=5.1.2 r-reshape2=1.4.4 r-plyr=1.8.6 r-stringr=1.4.0 r-stringi=1.5.3 cutadapt=3.4 dnaio=0.5.0 xopen
=1.1.0 isa-l=2.30.0 pigz=2.6 python-isal=0.10.0 q2galaxy=2021.4.0
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tool_deps/_conda/envs/mulled-v1-f2722a6add311aef8b463d1eafe3f8b312234cb34b14c6659654b36efafb897e

  added / updated specs:
    - _libgcc_mutex=0.1
    - _openmp_mutex=4.5
    - _r-mutex=1.0.1
    - alsa-lib=1.2.3
    - argon2-cffi=20.1.0
    - async_generator=1.10
    - attrs=20.3.0
    - backcall=0.2.0
    - backports.functools_lru_cache=1.6.4
    - backports=1.0
    - bibtexparser=1.1.0
    - binutils_impl_linux-64=2.35.1
    - binutils_linux-64=2.35
    - bioconductor-biobase=2.50.0
    - bioconductor-biocgenerics=0.36.0
    - bioconductor-biocparallel=1.24.1
    - bioconductor-biostrings=2.58.0
    - bioconductor-dada2=1.18.0
    - bioconductor-delayedarray=0.16.3
    - bioconductor-genomeinfodb=1.26.4
    - bioconductor-genomeinfodbdata=1.2.4
    - bioconductor-genomicalignments=1.26.0
    - bioconductor-genomicranges=1.42.0
    - bioconductor-iranges=2.24.1
    - bioconductor-matrixgenerics=1.2.1
    - bioconductor-rhtslib=1.22.0
    - bioconductor-rsamtools=2.6.0
    - bioconductor-s4vectors=0.28.1
    - bioconductor-shortread=1.48.0
    - bioconductor-summarizedexperiment=1.20.0
    - bioconductor-xvector=0.30.0
    - bioconductor-zlibbioc=1.36.0
    - biom-format=2.1.10
    - blas=1.1
    - blast=2.11.0
    - bleach=3.3.0
    - bokeh=2.3.1
    - bowtie2=2.4.2
    - brotlipy=0.7.0
    - bwidget=1.9.14
    - bzip2=1.0.8
    - c-ares=1.17.1
    - ca-certificates=2020.12.5
    - cachecontrol=0.12.6
    - cached-property=1.5.2
    - cached_property=1.5.2
    - cairo=1.16.0
    - certifi=2020.12.5
    - cffi=1.14.5
    - chardet=4.0.0
    - click=7.1.2
    - cryptography=3.4.7
    - curl=7.76.1
    - cutadapt=3.4
    - cycler=0.10.0
    - cython=0.29.23
    - dbus=1.13.6
    - deblur=1.1.0
    - decorator=4.4.2
    - defusedxml=0.7.1
    - dendropy=4.5.2
    - dnaio=0.5.0
    - emperor=1.0.3
    - entrez-direct=13.9
    - entrypoints=0.3
    - expat=2.3.0
    - fastcluster=1.1.26
    - fasttree=2.1.10
    - font-ttf-dejavu-sans-mono=2.37
    - font-ttf-inconsolata=3.000
    - font-ttf-source-code-pro=2.038
    - font-ttf-ubuntu=0.83
    - fontconfig=2.13.1
    - fonts-conda-ecosystem=1
    - fonts-conda-forge=1
    - freetype=2.10.4
    - fribidi=1.0.10
    - future=0.18.2
    - gcc_impl_linux-64=9.3.0
    - gcc_linux-64=9.3.0
    - gettext=0.19.8.1
    - gfortran_impl_linux-64=9.3.0
    - gfortran_linux-64=9.3.0
    - glib-tools=2.68.1
    - glib=2.68.1
    - gneiss=0.4.6
    - graphite2=1.3.13
    - gsl=2.6
    - gst-plugins-base=1.18.4
    - gstreamer=1.18.4
    - gxx_impl_linux-64=9.3.0
    - gxx_linux-64=9.3.0
    - h5py=3.2.1
    - harfbuzz=2.8.0
    - hdf5=1.10.6
    - hdmedians=0.14.2
    - hmmer=3.1b2
    - htslib=1.12
    - icu=68.1
    - idna=2.10
    - ijson=3.1.3
    - importlib-metadata=3.10.1
    - iniconfig=1.1.1
    - ipykernel=5.5.3
    - ipython=7.22.0
    - ipython_genutils=0.2.0
    - ipywidgets=7.6.3
    - iqtree=2.1.2
    - isa-l=2.30.0
    - jedi=0.18.0
    - jinja2=2.11.3
    - joblib=1.0.1
    - jpeg=9d
    - jsonschema=3.2.0
    - jupyter_client=6.1.12
    - jupyter_core=4.7.1
    - jupyterlab_pygments=0.1.2
    - jupyterlab_widgets=1.0.0
    - kernel-headers_linux-64=2.6.32
    - kiwisolver=1.3.1
    - krb5=1.17.2
    - lcms2=2.12
    - ld_impl_linux-64=2.35.1
    - libblas=3.9.0
    - libcblas=3.9.0
    - libclang=11.1.0
    - libcurl=7.76.1
    - libdeflate=1.7
    - libedit=3.1.20191231
    - libev=4.33
    - libevent=2.1.10
    - libffi=3.3
    - libgcc-devel_linux-64=9.3.0
    - libgcc-ng=9.3.0
    - libgcc=7.2.0
    - libgfortran-ng=9.3.0
    - libgfortran5=9.3.0
    - libglib=2.68.1
    - libgomp=9.3.0
    - libiconv=1.16
    - liblapack=3.9.0
    - libllvm11=11.1.0
    - libnghttp2=1.43.0
    - libogg=1.3.4
    - libopenblas=0.3.12
    - libopus=1.3.1
    - libpng=1.6.37
    - libpq=13.1
    - libsodium=1.0.18
    - libssh2=1.9.0
    - libstdcxx-devel_linux-64=9.3.0
    - libstdcxx-ng=9.3.0
    - libtiff=4.2.0
    - libuuid=2.32.1
    - libuv=1.41.0
    - libvorbis=1.3.7
    - libwebp-base=1.2.0
    - libxcb=1.13
    - libxkbcommon=1.0.3
    - libxml2=2.9.10
    - lockfile=0.12.2
    - lz4-c=1.9.3
    - lz4=3.1.3
    - mafft=7.475
    - make=4.3
    - markupsafe=1.1.1
    - matplotlib-base=3.4.1
    - matplotlib=3.4.1
    - mistune=0.8.4
    - more-itertools=8.7.0
    - msgpack-python=1.0.2
    - mysql-common=8.0.23
    - mysql-libs=8.0.23
    - natsort=7.1.1
    - nbclient=0.5.3
    - nbconvert=6.0.7
    - nbformat=5.1.3
    - ncurses=6.2
    - nest-asyncio=1.5.1
    - networkx=2.5.1
    - nodejs=15.14.0
    - nose=1.3.7
    - notebook=6.3.0
    - nspr=4.30
    - nss=3.64
    - numpy=1.20.2
    - olefile=0.46
    - openblas=0.3.12
    - openjdk=11.0.1
    - openjpeg=2.4.0
    - openssl=1.1.1k
    - packaging=20.9
    - pandas=1.2.4
    - pandoc=2.12
    - pandocfilters=1.4.2
    - pango=1.48.4
    - parso=0.8.2
    - patsy=0.5.1
    - pcre2=10.36
    - pcre=8.44
    - perl-app-cpanminus=1.7044
    - perl-archive-tar=2.32
    - perl-base=2.23
    - perl-business-isbn-data=20140910.003
    - perl-business-isbn=3.004
    - perl-carp=1.38
    - perl-common-sense=3.74
    - perl-compress-raw-bzip2=2.087
    - perl-compress-raw-zlib=2.087
    - perl-constant=1.33
    - perl-data-dumper=2.173
    - perl-digest-hmac=1.03
    - perl-digest-md5=2.55
    - perl-encode-locale=1.05
    - perl-encode=2.88
    - perl-exporter-tiny=1.002001
    - perl-exporter=5.72
    - perl-extutils-makemaker=7.36
    - perl-file-listing=6.04
    - perl-file-path=2.16
    - perl-file-temp=0.2304
    - perl-html-parser=3.72
    - perl-html-tagset=3.20
    - perl-html-tree=5.07
    - perl-http-cookies=6.04
    - perl-http-daemon=6.01
    - perl-http-date=6.02
    - perl-http-message=6.18
    - perl-http-negotiate=6.01
    - perl-io-compress=2.087
    - perl-io-html=1.001
    - perl-io-socket-ssl=2.066
    - perl-io-zlib=1.10
    - perl-json-xs=2.34
    - perl-json=4.02
    - perl-libwww-perl=6.39
    - perl-list-moreutils-xs=0.428
    - perl-list-moreutils=0.428
    - perl-lwp-mediatypes=6.04
    - perl-lwp-protocol-https=6.07
    - perl-mime-base64=3.15
    - perl-mozilla-ca=20180117
    - perl-net-http=6.19
    - perl-net-ssleay=1.88
    - perl-ntlm=1.09
    - perl-parent=0.236
    - perl-pathtools=3.75
    - perl-scalar-list-utils=1.52
    - perl-socket=2.027
    - perl-storable=3.15
    - perl-test-requiresinternet=0.05
    - perl-time-local=1.28
    - perl-try-tiny=0.30
    - perl-types-serialiser=1.0
    - perl-uri=1.76
    - perl-www-robotrules=6.02
    - perl-xml-namespacesupport=1.12
    - perl-xml-parser=2.44_01
    - perl-xml-sax-base=1.09
    - perl-xml-sax-expat=0.51
    - perl-xml-sax=1.02
    - perl-xml-simple=2.25
    - perl-xsloader=0.24
    - perl=5.26.2
    - pexpect=4.8.0
    - pickleshare=0.7.5
    - pigz=2.6
    - pillow=8.1.2
    - pip=21.0.1
    - pixman=0.40.0
    - pluggy=0.13.1
    - prometheus_client=0.10.1
    - prompt-toolkit=3.0.18
    - psutil=5.8.0
    - pthread-stubs=0.4
    - ptyprocess=0.7.0
    - py=1.10.0
    - pycparser=2.20
    - pygments=2.8.1
    - pyopenssl=20.0.1
    - pyparsing=2.4.7
    - pyqt-impl=5.12.3
    - pyqt5-sip=4.19.18
    - pyqt=5.12.3
    - pyqtchart=5.12
    - pyqtwebengine=5.12.1
    - pyrsistent=0.17.3
    - pysocks=1.7.1
    - pytest=6.2.3
    - python-dateutil=2.8.1
    - python-isal=0.10.0
    - python=3.8.8
    - python_abi=3.8
    - pytz=2021.1
    - pyyaml=5.4.1
    - pyzmq=22.0.3
    - q2-alignment=2021.4.0
    - q2-composition=2021.4.0
    - q2-cutadapt=2021.4.0
    - q2-dada2=2021.4.0
    - q2-deblur=2021.4.0
    - q2-demux=2021.4.0
    - q2-diversity-lib=2021.4.0
    - q2-diversity=2021.4.0
    - q2-emperor=2021.4.0
    - q2-feature-classifier=2021.4.0
    - q2-feature-table=2021.4.0
    - q2-fragment-insertion=2021.4.0
    - q2-gneiss=2021.4.0
    - q2-longitudinal=2021.4.0
    - q2-metadata=2021.4.0
    - q2-phylogeny=2021.4.0
    - q2-quality-control=2021.4.0
    - q2-quality-filter=2021.4.0
    - q2-sample-classifier=2021.4.0
    - q2-taxa=2021.4.0
    - q2-types=2021.4.0
    - q2-vsearch=2021.4.0
    - q2galaxy=2021.4.0
    - q2templates=2021.4.0
    - qiime2=2021.4.0
    - qt=5.12.9
    - r-assertthat=0.2.1
    - r-backports=1.2.1
    - r-base=4.0.3
    - r-bh=1.75.0_0
    - r-bitops=1.0_6
    - r-brio=1.1.1
    - r-callr=3.6.0
    - r-cli=2.4.0
    - r-cluster=2.1.1
    - r-colorspace=2.0_0
    - r-crayon=1.4.1
    - r-desc=1.3.0
    - r-diffobj=0.3.3
    - r-digest=0.6.27
    - r-ellipsis=0.3.1
    - r-evaluate=0.14
    - r-fansi=0.4.2
    - r-farver=2.1.0
    - r-formatr=1.9
    - r-futile.logger=1.4.3
    - r-futile.options=1.0.1
    - r-ggplot2=3.3.3
    - r-glue=1.4.2
    - r-gtable=0.3.0
    - r-hwriter=1.3.2
    - r-isoband=0.2.4
    - r-jpeg=0.1_8.1
    - r-jsonlite=1.7.2
    - r-labeling=0.4.2
    - r-lambda.r=1.2.4
    - r-lattice=0.20_41
    - r-latticeextra=0.6_29
    - r-lifecycle=1.0.0
    - r-magrittr=2.0.1
    - r-mass=7.3_53.1
    - r-matrix=1.3_2
    - r-matrixstats=0.58.0
    - r-mgcv=1.8_34
    - r-munsell=0.5.0
    - r-nlme=3.1_152
    - r-permute=0.9_5
    - r-pillar=1.6.0
    - r-pkgconfig=2.0.3
    - r-pkgload=1.2.1
    - r-plyr=1.8.6
    - r-png=0.1_7
    - r-praise=1.0.0
    - r-processx=3.5.1
    - r-ps=1.6.0
    - r-r6=2.5.0
    - r-rcolorbrewer=1.1_2
    - r-rcpp=1.0.6
    - r-rcppparallel=5.1.2
    - r-rcurl=1.98_1.3
    - r-rematch2=2.1.2
    - r-reshape2=1.4.4
    - r-rlang=0.4.10
    - r-rprojroot=2.0.2
    - r-rstudioapi=0.13
    - r-scales=1.1.1
    - r-snow=0.4_3
    - r-stringi=1.5.3
    - r-stringr=1.4.0
    - r-testthat=3.0.2
    - r-tibble=3.1.1
    - r-utf8=1.2.1
    - r-vctrs=0.3.7
    - r-vegan=2.5_7
    - r-viridislite=0.4.0
    - r-waldo=0.2.5
    - r-withr=2.4.2
    - r-zeallot=0.1.0
    - raxml=8.2.12
    - readline=8.1
    - requests=2.25.1
    - samtools=1.12
    - scikit-bio=0.5.6
    - scikit-learn=0.24.1
    - scipy=1.6.2
    - seaborn-base=0.11.1
    - seaborn=0.11.1
    - sed=4.8
    - send2trash=1.5.0
    - sepp=4.3.10
    - setuptools=49.6.0
    - six=1.15.0
    - sortmerna=2.0
    - sqlite=3.35.4
    - statsmodels=0.12.2
    - sysroot_linux-64=2.12
    - tbb=2020.2
    - terminado=0.9.4
    - testpath=0.4.4
    - threadpoolctl=2.1.0
    - tk=8.6.10
    - tktable=2.10
    - toml=0.10.2
    - tornado=6.1
    - traitlets=5.0.5
    - typing_extensions=3.7.4.3
    - tzlocal=2.1
    - unifrac=0.20.2
    - urllib3=1.26.4
    - vsearch=2.7.0
    - wcwidth=0.2.5
    - webencodings=0.5.1
    - wheel=0.36.2
    - widgetsnbextension=3.5.1
    - xopen=1.1.0
    - xorg-kbproto=1.0.7
    - xorg-libice=1.0.10
    - xorg-libsm=1.2.3
    - xorg-libx11=1.7.0
    - xorg-libxau=1.0.9
    - xorg-libxdmcp=1.1.3
    - xorg-libxext=1.3.4
    - xorg-libxrender=0.9.10
    - xorg-libxt=1.2.1
    - xorg-renderproto=0.11.1
    - xorg-xextproto=7.3.0
    - xorg-xproto=7.0.31
    - xz=5.2.5
    - yaml=0.2.5
    - zeromq=4.3.4
    - zipp=3.4.1
    - zlib=1.2.11
    - zstd=1.4.9


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
    _openmp_mutex-4.5          |            1_gnu          22 KB  conda-forge
    _r-mutex-1.0.1             |      anacondar_1           3 KB  conda-forge
    alsa-lib-1.2.3             |       h516909a_0         560 KB  conda-forge
    argon2-cffi-20.1.0         |   py38h497a2fe_2          48 KB  conda-forge
    async_generator-1.10       |             py_0          18 KB  conda-forge
    attrs-20.3.0               |     pyhd3deb0d_0          41 KB  conda-forge
    backcall-0.2.0             |     pyh9f0ad1d_0          13 KB  conda-forge
    backports-1.0              |             py_2           4 KB  conda-forge
    backports.functools_lru_cache-1.6.4|     pyhd8ed1ab_0           9 KB  conda-forge
    bibtexparser-1.1.0         |             py_0          32 KB  conda-forge
    binutils_impl_linux-64-2.35.1|       h193b22a_2         9.3 MB  conda-forge
    binutils_linux-64-2.35     |      h67ddf6f_30          22 KB  conda-forge
    bioconductor-biobase-2.50.0|    r40hd029910_1         2.3 MB  bioconda
    bioconductor-biocgenerics-0.36.0|    r40hdfd78af_1         699 KB  bioconda
    bioconductor-biocparallel-1.24.1|    r40h399db7b_0         1.2 MB  bioconda
    bioconductor-biostrings-2.58.0|    r40hd029910_1        13.9 MB  bioconda
    bioconductor-dada2-1.18.0  |    r40h399db7b_1         2.5 MB  bioconda
    bioconductor-delayedarray-0.16.3|    r40hd029910_0         2.2 MB  bioconda
    bioconductor-genomeinfodb-1.26.4|    r40hdfd78af_0         4.0 MB  bioconda
    bioconductor-genomeinfodbdata-1.2.4|    r40hdfd78af_2           7 KB  bioconda
    bioconductor-genomicalignments-1.26.0|    r40hd029910_1         2.3 MB  bioconda
    bioconductor-genomicranges-1.42.0|    r40hd029910_1         2.2 MB  bioconda
    bioconductor-iranges-2.24.1|    r40hd029910_0         2.4 MB  bioconda
    bioconductor-matrixgenerics-1.2.1|    r40hdfd78af_0         324 KB  bioconda
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    pyzmq-22.0.3               |   py38h2035c66_1         510 KB  conda-forge
    q2-alignment-2021.4.0      |           py38_0          19 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-composition-2021.4.0    |           py38_0         169 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-cutadapt-2021.4.0       |           py38_0         6.3 MB  https://packages.qiime2.org/qiime2/latest/tested
    q2-dada2-2021.4.0          |           py38_0         464 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-deblur-2021.4.0         |           py38_0         271 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-demux-2021.4.0          |           py38_0         191 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-diversity-2021.4.0      |           py38_0         292 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-diversity-lib-2021.4.0  |                0          88 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-emperor-2021.4.0        |           py38_0          14 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-feature-classifier-2021.4.0|           py38_0         140 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-feature-table-2021.4.0  |           py38_0         229 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-fragment-insertion-2021.4.0|           py38_0          31 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-gneiss-2021.4.0         |           py38_0          53 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-longitudinal-2021.4.0   |           py38_0         7.6 MB  https://packages.qiime2.org/qiime2/latest/tested
    q2-metadata-2021.4.0       |           py38_0         969 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-phylogeny-2021.4.0      |           py38_0          47 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-quality-control-2021.4.0|           py38_0         286 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-quality-filter-2021.4.0 |           py38_0          32 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-sample-classifier-2021.4.0|           py38_0         627 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-taxa-2021.4.0           |           py38_0         109 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-types-2021.4.0          |           py38_0         129 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2-vsearch-2021.4.0        |           py38_0         631 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2galaxy-2021.4.0          |           py38_0          60 KB  https://packages.qiime2.org/qiime2/latest/tested
    q2templates-2021.4.0       |           py38_0         188 KB  https://packages.qiime2.org/qiime2/latest/tested
    qiime2-2021.4.0            |           py38_0         322 KB  https://packages.qiime2.org/qiime2/latest/tested
    qt-5.12.9                  |       hda022c4_4        99.5 MB  conda-forge
    r-assertthat-0.2.1         |    r40hc72bb7e_2          70 KB  conda-forge
    r-backports-1.2.1          |    r40hcfec24a_0          99 KB  conda-forge
    r-base-4.0.3               |       h349a78a_8        23.7 MB  conda-forge
    r-bh-1.75.0_0              |    r40hc72bb7e_0        11.3 MB  conda-forge
    r-bitops-1.0_6             | r40hcdcec82_1004          39 KB  conda-forge
    r-brio-1.1.1               |    r40hcfec24a_0          37 KB  conda-forge
    r-callr-3.6.0              |    r40hc72bb7e_0         429 KB  conda-forge
    r-cli-2.4.0                |    r40hc72bb7e_0         498 KB  conda-forge
    r-cluster-2.1.1            |    r40h859d828_0         566 KB  conda-forge
    r-colorspace-2.0_0         |    r40h9e2df91_0         2.5 MB  conda-forge
    r-crayon-1.4.1             |    r40hc72bb7e_0         146 KB  conda-forge
    r-desc-1.3.0               |    r40hc72bb7e_0         548 KB  conda-forge
    r-diffobj-0.3.3            |    r40hcfec24a_0         1.0 MB  conda-forge
    r-digest-0.6.27            |    r40h03ef668_0         211 KB  conda-forge
    r-ellipsis-0.3.1           |    r40hcdcec82_0          49 KB  conda-forge
    r-evaluate-0.14            |    r40hc72bb7e_2          81 KB  conda-forge
    r-fansi-0.4.2              |    r40hcfec24a_0         199 KB  conda-forge
    r-farver-2.1.0             |    r40h03ef668_0         1.5 MB  conda-forge
    r-formatr-1.9              |    r40hc72bb7e_0         157 KB  conda-forge
    r-futile.logger-1.4.3      | r40hc72bb7e_1003         108 KB  conda-forge
    r-futile.options-1.0.1     | r40hc72bb7e_1002          27 KB  conda-forge
    r-ggplot2-3.3.3            |    r40hc72bb7e_0         3.9 MB  conda-forge
    r-glue-1.4.2               |    r40hcfec24a_0         141 KB  conda-forge
    r-gtable-0.3.0             |    r40hc72bb7e_3         416 KB  conda-forge
    r-hwriter-1.3.2            | r40hc72bb7e_1003         173 KB  conda-forge
    r-isoband-0.2.4            |    r40h03ef668_0         2.2 MB  conda-forge
    r-jpeg-0.1_8.1             |    r40hcfec24a_1          52 KB  conda-forge
    r-jsonlite-1.7.2           |    r40hcfec24a_0         462 KB  conda-forge
    r-labeling-0.4.2           |    r40hc72bb7e_0          67 KB  conda-forge
    r-lambda.r-1.2.4           |    r40hc72bb7e_1         120 KB  conda-forge
    r-lattice-0.20_41          |    r40hcfec24a_3         1.1 MB  conda-forge
    r-latticeextra-0.6_29      |    r40hc72bb7e_1         2.1 MB  conda-forge
    r-lifecycle-1.0.0          |    r40hc72bb7e_0          97 KB  conda-forge
    r-magrittr-2.0.1           |    r40hcfec24a_1         211 KB  conda-forge
    r-mass-7.3_53.1            |    r40hcfec24a_0         1.1 MB  conda-forge
    r-matrix-1.3_2             |    r40he454529_0         3.9 MB  conda-forge
    r-matrixstats-0.58.0       |    r40hcfec24a_0         939 KB  conda-forge
    r-mgcv-1.8_34              |    r40he454529_0         2.9 MB  conda-forge
    r-munsell-0.5.0            | r40hc72bb7e_1003         246 KB  conda-forge
    r-nlme-3.1_152             |    r40h859d828_0         2.3 MB  conda-forge
    r-permute-0.9_5            |    r40h785f33e_3         510 KB  conda-forge
    r-pillar-1.6.0             |    r40hc72bb7e_0         957 KB  conda-forge
    r-pkgconfig-2.0.3          |    r40hc72bb7e_1          25 KB  conda-forge
    r-pkgload-1.2.1            |    r40h03ef668_0         169 KB  conda-forge
    r-plyr-1.8.6               |    r40h03ef668_1         832 KB  conda-forge
    r-png-0.1_7                | r40hcfec24a_1004          58 KB  conda-forge
    r-praise-1.0.0             | r40hc72bb7e_1004          23 KB  conda-forge
    r-processx-3.5.1           |    r40hcfec24a_0         311 KB  conda-forge
    r-ps-1.6.0                 |    r40hcfec24a_0         300 KB  conda-forge
    r-r6-2.5.0                 |    r40hc72bb7e_0          89 KB  conda-forge
    r-rcolorbrewer-1.1_2       | r40h785f33e_1003          64 KB  conda-forge
    r-rcpp-1.0.6               |    r40h03ef668_0         2.0 MB  conda-forge
    r-rcppparallel-5.1.2       |    r40h03ef668_0         562 KB  conda-forge
    r-rcurl-1.98_1.3           |    r40hcfec24a_0         983 KB  conda-forge
    r-rematch2-2.1.2           |    r40hc72bb7e_1          52 KB  conda-forge
    r-reshape2-1.4.4           |    r40h03ef668_1         128 KB  conda-forge
    r-rlang-0.4.10             |    r40hcfec24a_0         1.1 MB  conda-forge
    r-rprojroot-2.0.2          |    r40hc72bb7e_0         110 KB  conda-forge
    r-rstudioapi-0.13          |    r40hc72bb7e_0         281 KB  conda-forge
    r-scales-1.1.1             |    r40hc72bb7e_0         556 KB  conda-forge
    r-snow-0.4_3               | r40hc72bb7e_1002         124 KB  conda-forge
    r-stringi-1.5.3            |    r40hcabe038_1         803 KB  conda-forge
    r-stringr-1.4.0            |    r40hc72bb7e_2         210 KB  conda-forge
    r-testthat-3.0.2           |    r40h03ef668_0         1.6 MB  conda-forge
    r-tibble-3.1.1             |    r40hcfec24a_0         738 KB  conda-forge
    r-utf8-1.2.1               |    r40hcfec24a_0         162 KB  conda-forge
    r-vctrs-0.3.7              |    r40hcfec24a_0         1.1 MB  conda-forge
    r-vegan-2.5_7              |    r40h52d45c5_0         3.4 MB  conda-forge
    r-viridislite-0.4.0        |    r40hc72bb7e_0         1.3 MB  conda-forge
    r-waldo-0.2.5              |    r40hc72bb7e_0          78 KB  conda-forge
    r-withr-2.4.2              |    r40hc72bb7e_0         220 KB  conda-forge
    r-zeallot-0.1.0            | r40hc72bb7e_1002          62 KB  conda-forge
    raxml-8.2.12               |       h779adbc_3         3.1 MB  bioconda
    readline-8.1               |       h46c0cb4_0         295 KB  conda-forge
    requests-2.25.1            |     pyhd3deb0d_0          51 KB  conda-forge
    samtools-1.12              |       h9aed4be_1         386 KB  bioconda
    scikit-bio-0.5.6           |   py38h0b5ebd8_4         1.3 MB  conda-forge
    scikit-learn-0.24.1        |   py38h658cfdd_0         7.6 MB  conda-forge
    scipy-1.6.2                |   py38h7b17777_0        20.6 MB  conda-forge
    seaborn-0.11.1             |       hd8ed1ab_1           4 KB  conda-forge
    seaborn-base-0.11.1        |     pyhd8ed1ab_1         217 KB  conda-forge
    sed-4.8                    |       he412f7d_0         264 KB  conda-forge
    send2trash-1.5.0           |             py_0          12 KB  conda-forge
    sepp-4.3.10                |   py38h3252c3a_2         6.6 MB  bioconda
    setuptools-49.6.0          |   py38h578d9bd_3         929 KB  conda-forge
    six-1.15.0                 |     pyh9f0ad1d_0          14 KB  conda-forge
    sortmerna-2.0              |       he860b03_4         337 KB  bioconda
    sqlite-3.35.4              |       h74cdb3f_0         1.4 MB  conda-forge
    statsmodels-0.12.2         |   py38h5c078b8_0        11.4 MB  conda-forge
    sysroot_linux-64-2.12      |      h77966d4_13        30.2 MB  conda-forge
    tbb-2020.2                 |       h4bd325d_4         1.5 MB  conda-forge
    terminado-0.9.4            |   py38h578d9bd_0          26 KB  conda-forge
    testpath-0.4.4             |             py_0          85 KB  conda-forge
    threadpoolctl-2.1.0        |     pyh5ca1d4c_0          15 KB  conda-forge
    tk-8.6.10                  |       h21135ba_1         3.2 MB  conda-forge
    tktable-2.10               |       hb7b940f_3          89 KB  conda-forge
    toml-0.10.2                |     pyhd8ed1ab_0          18 KB  conda-forge
    tornado-6.1                |   py38h497a2fe_1         649 KB  conda-forge
    traitlets-5.0.5            |             py_0          81 KB  conda-forge
    tzlocal-2.1                |     pyh9f0ad1d_0          18 KB  conda-forge
    unifrac-0.20.2             |   py38hc37a69a_1         442 KB  bioconda
    urllib3-1.26.4             |     pyhd8ed1ab_0          99 KB  conda-forge
    vsearch-2.7.0              |                1         713 KB  bioconda
    wcwidth-0.2.5              |     pyh9f0ad1d_2          33 KB  conda-forge
    wheel-0.36.2               |     pyhd3deb0d_0          31 KB  conda-forge
    widgetsnbextension-3.5.1   |   py38h578d9bd_4         1.8 MB  conda-forge
    xopen-1.1.0                |   py38h578d9bd_2          20 KB  conda-forge
    xorg-kbproto-1.0.7         |    h7f98852_1002          27 KB  conda-forge
    xorg-libice-1.0.10         |       h7f98852_0          58 KB  conda-forge
    xorg-libsm-1.2.3           |    hd9c2040_1000          26 KB  conda-forge
    xorg-libx11-1.7.0          |       h7f98852_0         923 KB  conda-forge
    xorg-libxau-1.0.9          |       h7f98852_0          13 KB  conda-forge
    xorg-libxdmcp-1.1.3        |       h7f98852_0          19 KB  conda-forge
    xorg-libxext-1.3.4         |       h7f98852_1          54 KB  conda-forge
    xorg-libxrender-0.9.10     |    h7f98852_1003          32 KB  conda-forge
    xorg-libxt-1.2.1           |       h7f98852_2         375 KB  conda-forge
    xorg-renderproto-0.11.1    |    h7f98852_1002           9 KB  conda-forge
    xorg-xextproto-7.3.0       |    h7f98852_1002          28 KB  conda-forge
    xorg-xproto-7.0.31         |    h7f98852_1007          73 KB  conda-forge
    xz-5.2.5                   |       h516909a_1         343 KB  conda-forge
    yaml-0.2.5                 |       h516909a_0          82 KB  conda-forge
    zeromq-4.3.4               |       h9c3ff4c_0         352 KB  conda-forge
    zipp-3.4.1                 |     pyhd8ed1ab_0          11 KB  conda-forge
    zlib-1.2.11                |    h516909a_1010         106 KB  conda-forge
    zstd-1.4.9                 |       ha95c52a_0         431 KB  conda-forge
    ------------------------------------------------------------
                                           Total:       979.4 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
  _r-mutex           conda-forge/noarch::_r-mutex-1.0.1-anacondar_1
  alsa-lib           conda-forge/linux-64::alsa-lib-1.2.3-h516909a_0
  argon2-cffi        conda-forge/linux-64::argon2-cffi-20.1.0-py38h497a2fe_2
  async_generator    conda-forge/noarch::async_generator-1.10-py_0
  attrs              conda-forge/noarch::attrs-20.3.0-pyhd3deb0d_0
  backcall           conda-forge/noarch::backcall-0.2.0-pyh9f0ad1d_0
  backports          conda-forge/noarch::backports-1.0-py_2
  backports.functoo~ conda-forge/noarch::backports.functools_lru_cache-1.6.4-pyhd8ed1ab_0
  bibtexparser       conda-forge/noarch::bibtexparser-1.1.0-py_0
  binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.35.1-h193b22a_2
  binutils_linux-64  conda-forge/linux-64::binutils_linux-64-2.35-h67ddf6f_30
  bioconductor-biob~ bioconda/linux-64::bioconductor-biobase-2.50.0-r40hd029910_1
  bioconductor-bioc~ bioconda/noarch::bioconductor-biocgenerics-0.36.0-r40hdfd78af_1
  bioconductor-bioc~ bioconda/linux-64::bioconductor-biocparallel-1.24.1-r40h399db7b_0
  bioconductor-bios~ bioconda/linux-64::bioconductor-biostrings-2.58.0-r40hd029910_1
  bioconductor-dada2 bioconda/linux-64::bioconductor-dada2-1.18.0-r40h399db7b_1
  bioconductor-dela~ bioconda/linux-64::bioconductor-delayedarray-0.16.3-r40hd029910_0
  bioconductor-geno~ bioconda/noarch::bioconductor-genomeinfodb-1.26.4-r40hdfd78af_0
  bioconductor-geno~ bioconda/noarch::bioconductor-genomeinfodbdata-1.2.4-r40hdfd78af_2
  bioconductor-geno~ bioconda/linux-64::bioconductor-genomicalignments-1.26.0-r40hd029910_1
  bioconductor-geno~ bioconda/linux-64::bioconductor-genomicranges-1.42.0-r40hd029910_1
  bioconductor-iran~ bioconda/linux-64::bioconductor-iranges-2.24.1-r40hd029910_0
  bioconductor-matr~ bioconda/noarch::bioconductor-matrixgenerics-1.2.1-r40hdfd78af_0
  bioconductor-rhts~ bioconda/linux-64::bioconductor-rhtslib-1.22.0-r40hd029910_1
  bioconductor-rsam~ bioconda/linux-64::bioconductor-rsamtools-2.6.0-r40h399db7b_1
  bioconductor-s4ve~ bioconda/linux-64::bioconductor-s4vectors-0.28.1-r40hd029910_0
  bioconductor-shor~ bioconda/linux-64::bioconductor-shortread-1.48.0-r40h399db7b_1
  bioconductor-summ~ bioconda/noarch::bioconductor-summarizedexperiment-1.20.0-r40hdfd78af_1
  bioconductor-xvec~ bioconda/linux-64::bioconductor-xvector-0.30.0-r40hd029910_1
  bioconductor-zlib~ bioconda/linux-64::bioconductor-zlibbioc-1.36.0-r40hd029910_1
  biom-format        conda-forge/linux-64::biom-format-2.1.10-py38h0b5ebd8_0
  blas               conda-forge/linux-64::blas-1.1-openblas
  blast              bioconda/linux-64::blast-2.11.0-pl526he19e7b1_0
  bleach             conda-forge/noarch::bleach-3.3.0-pyh44b312d_0
  bokeh              conda-forge/linux-64::bokeh-2.3.1-py38h578d9bd_0
  bowtie2            bioconda/linux-64::bowtie2-2.4.2-py38hc2f83ea_2
  brotlipy           conda-forge/linux-64::brotlipy-0.7.0-py38h497a2fe_1001
  bwidget            conda-forge/linux-64::bwidget-1.9.14-ha770c72_0
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
  c-ares             conda-forge/linux-64::c-ares-1.17.1-h7f98852_1
  ca-certificates    conda-forge/linux-64::ca-certificates-2020.12.5-ha878542_0
  cachecontrol       conda-forge/noarch::cachecontrol-0.12.6-py_0
  cached-property    conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
  cached_property    conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
  cairo              conda-forge/linux-64::cairo-1.16.0-h6cf1ce9_1008
  certifi            conda-forge/linux-64::certifi-2020.12.5-py38h578d9bd_1
  cffi               conda-forge/linux-64::cffi-1.14.5-py38ha65f79e_0
  chardet            conda-forge/linux-64::chardet-4.0.0-py38h578d9bd_1
  click              conda-forge/noarch::click-7.1.2-pyh9f0ad1d_0
  cryptography       conda-forge/linux-64::cryptography-3.4.7-py38ha5dfef3_0
  curl               conda-forge/linux-64::curl-7.76.1-h979ede3_1
  cutadapt           bioconda/linux-64::cutadapt-3.4-py38h4a8c8d9_1
  cycler             conda-forge/noarch::cycler-0.10.0-py_2
  cython             conda-forge/linux-64::cython-0.29.23-py38h709712a_0
  dbus               conda-forge/linux-64::dbus-1.13.6-h48d8840_2
  deblur             bioconda/noarch::deblur-1.1.0-py_2
  decorator          conda-forge/noarch::decorator-4.4.2-py_0
  defusedxml         conda-forge/noarch::defusedxml-0.7.1-pyhd8ed1ab_0
  dendropy           bioconda/noarch::dendropy-4.5.2-pyh3252c3a_0
  dnaio              bioconda/linux-64::dnaio-0.5.0-py38h4a8c8d9_1
  emperor            conda-forge/linux-64::emperor-1.0.3-py38h578d9bd_0
  entrez-direct      bioconda/linux-64::entrez-direct-13.9-pl5262he881be0_2
  entrypoints        conda-forge/noarch::entrypoints-0.3-pyhd8ed1ab_1003
  expat              conda-forge/linux-64::expat-2.3.0-h9c3ff4c_0
  fastcluster        conda-forge/linux-64::fastcluster-1.1.26-py38hc5bc63f_2
  fasttree           bioconda/linux-64::fasttree-2.1.10-0
  font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0
  font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0
  font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0
  font-ttf-ubuntu    conda-forge/noarch::font-ttf-ubuntu-0.83-hab24e00_0
  fontconfig         conda-forge/linux-64::fontconfig-2.13.1-hba837de_1005
  fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0
  fonts-conda-forge  conda-forge/noarch::fonts-conda-forge-1-0
  freetype           conda-forge/linux-64::freetype-2.10.4-h0708190_1
  fribidi            conda-forge/linux-64::fribidi-1.0.10-h36c2ea0_0
  future             conda-forge/linux-64::future-0.18.2-py38h578d9bd_3
  gcc_impl_linux-64  conda-forge/linux-64::gcc_impl_linux-64-9.3.0-h70c0ae5_19
  gcc_linux-64       conda-forge/linux-64::gcc_linux-64-9.3.0-hf25ea35_30
  gettext            conda-forge/linux-64::gettext-0.19.8.1-h0b5b191_1005
  gfortran_impl_lin~ conda-forge/linux-64::gfortran_impl_linux-64-9.3.0-hc4a2995_19
  gfortran_linux-64  conda-forge/linux-64::gfortran_linux-64-9.3.0-hdc58fab_30
  glib               conda-forge/linux-64::glib-2.68.1-h9c3ff4c_0
  glib-tools         conda-forge/linux-64::glib-tools-2.68.1-h9c3ff4c_0
  gneiss             bioconda/noarch::gneiss-0.4.6-py_0
  graphite2          conda-forge/linux-64::graphite2-1.3.13-h58526e2_1001
  gsl                conda-forge/linux-64::gsl-2.6-he838d99_2
  gst-plugins-base   conda-forge/linux-64::gst-plugins-base-1.18.4-hf529b03_2
  gstreamer          conda-forge/linux-64::gstreamer-1.18.4-h76c114f_2
  gxx_impl_linux-64  conda-forge/linux-64::gxx_impl_linux-64-9.3.0-hd87eabc_19
  gxx_linux-64       conda-forge/linux-64::gxx_linux-64-9.3.0-h3fbe746_30
  h5py               conda-forge/linux-64::h5py-3.2.1-nompi_py38h9915d05_100
  harfbuzz           conda-forge/linux-64::harfbuzz-2.8.0-h83ec7ef_1
  hdf5               conda-forge/linux-64::hdf5-1.10.6-nompi_h6a2412b_1114
  hdmedians          conda-forge/linux-64::hdmedians-0.14.2-py38h5c078b8_0
  hmmer              bioconda/linux-64::hmmer-3.1b2-3
  htslib             bioconda/linux-64::htslib-1.12-h9093b5e_1
  icu                conda-forge/linux-64::icu-68.1-h58526e2_0
  idna               conda-forge/noarch::idna-2.10-pyh9f0ad1d_0
  ijson              conda-forge/noarch::ijson-3.1.3-pyhd3deb0d_0
  importlib-metadata conda-forge/linux-64::importlib-metadata-3.10.1-py38h578d9bd_0
  iniconfig          conda-forge/noarch::iniconfig-1.1.1-pyh9f0ad1d_0
  ipykernel          conda-forge/linux-64::ipykernel-5.5.3-py38hd0cf306_0
  ipython            conda-forge/linux-64::ipython-7.22.0-py38hd0cf306_0
  ipython_genutils   conda-forge/noarch::ipython_genutils-0.2.0-py_1
  ipywidgets         conda-forge/noarch::ipywidgets-7.6.3-pyhd3deb0d_0
  iqtree             bioconda/linux-64::iqtree-2.1.2-h56fc30b_0
  isa-l              conda-forge/linux-64::isa-l-2.30.0-ha770c72_4
  jedi               conda-forge/linux-64::jedi-0.18.0-py38h578d9bd_2
  jinja2             conda-forge/noarch::jinja2-2.11.3-pyh44b312d_0
  joblib             conda-forge/noarch::joblib-1.0.1-pyhd8ed1ab_0
  jpeg               conda-forge/linux-64::jpeg-9d-h36c2ea0_0
  jsonschema         conda-forge/noarch::jsonschema-3.2.0-pyhd8ed1ab_3
  jupyter_client     conda-forge/noarch::jupyter_client-6.1.12-pyhd8ed1ab_0
  jupyter_core       conda-forge/linux-64::jupyter_core-4.7.1-py38h578d9bd_0
  jupyterlab_pygmen~ conda-forge/noarch::jupyterlab_pygments-0.1.2-pyh9f0ad1d_0
  jupyterlab_widgets conda-forge/noarch::jupyterlab_widgets-1.0.0-pyhd8ed1ab_1
  kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-64-2.6.32-h77966d4_13
  kiwisolver         conda-forge/linux-64::kiwisolver-1.3.1-py38h1fd1430_1
  krb5               conda-forge/linux-64::krb5-1.17.2-h926e7f8_0
  lcms2              conda-forge/linux-64::lcms2-2.12-hddcbb42_0
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.35.1-hea4e1c9_2
  libblas            conda-forge/linux-64::libblas-3.9.0-8_openblas
  libcblas           conda-forge/linux-64::libcblas-3.9.0-8_openblas
  libclang           conda-forge/linux-64::libclang-11.1.0-default_ha53f305_1
  libcurl            conda-forge/linux-64::libcurl-7.76.1-hc4aaa36_1
  libdeflate         conda-forge/linux-64::libdeflate-1.7-h7f98852_5
  libedit            conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
  libev              conda-forge/linux-64::libev-4.33-h516909a_1
  libevent           conda-forge/linux-64::libevent-2.1.10-hcdb4288_3
  libffi             conda-forge/linux-64::libffi-3.3-h58526e2_2
  libgcc             conda-forge/linux-64::libgcc-7.2.0-h69d50b8_2
  libgcc-devel_linu~ conda-forge/linux-64::libgcc-devel_linux-64-9.3.0-h7864c58_19
  libgcc-ng          conda-forge/linux-64::libgcc-ng-9.3.0-h2828fa1_19
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-9.3.0-hff62375_19
  libgfortran5       conda-forge/linux-64::libgfortran5-9.3.0-hff62375_19
  libglib            conda-forge/linux-64::libglib-2.68.1-h3e27bee_0
  libgomp            conda-forge/linux-64::libgomp-9.3.0-h2828fa1_19
  libiconv           conda-forge/linux-64::libiconv-1.16-h516909a_0
  liblapack          conda-forge/linux-64::liblapack-3.9.0-8_openblas
  libllvm11          conda-forge/linux-64::libllvm11-11.1.0-hf817b99_2
  libnghttp2         conda-forge/linux-64::libnghttp2-1.43.0-h812cca2_0
  libogg             conda-forge/linux-64::libogg-1.3.4-h7f98852_1
  libopenblas        conda-forge/linux-64::libopenblas-0.3.12-pthreads_h4812303_1
  libopus            conda-forge/linux-64::libopus-1.3.1-h7f98852_1
  libpng             conda-forge/linux-64::libpng-1.6.37-h21135ba_2
  libpq              conda-forge/linux-64::libpq-13.1-hfd2b0eb_2
  libsodium          conda-forge/linux-64::libsodium-1.0.18-h36c2ea0_1
  libssh2            conda-forge/linux-64::libssh2-1.9.0-ha56f1ee_6
  libstdcxx-devel_l~ conda-forge/linux-64::libstdcxx-devel_linux-64-9.3.0-hb016644_19
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-9.3.0-h6de172a_19
  libtiff            conda-forge/linux-64::libtiff-4.2.0-hbd63e13_2
  libuuid            conda-forge/linux-64::libuuid-2.32.1-h7f98852_1000
  libuv              conda-forge/linux-64::libuv-1.41.0-h7f98852_0
  libvorbis          conda-forge/linux-64::libvorbis-1.3.7-h9c3ff4c_0
  libwebp-base       conda-forge/linux-64::libwebp-base-1.2.0-h7f98852_2
  libxcb             conda-forge/linux-64::libxcb-1.13-h7f98852_1003
  libxkbcommon       conda-forge/linux-64::libxkbcommon-1.0.3-he3ba5ed_0
  libxml2            conda-forge/linux-64::libxml2-2.9.10-h72842e0_4
  libxslt            conda-forge/linux-64::libxslt-1.1.33-h15afd5d_2
  lockfile           conda-forge/noarch::lockfile-0.12.2-py_1
  lxml               conda-forge/linux-64::lxml-4.6.3-py38hf1fe3a4_0
  lz4                conda-forge/linux-64::lz4-3.1.3-py38hebdc3cf_0
  lz4-c              conda-forge/linux-64::lz4-c-1.9.3-h9c3ff4c_0
  mafft              bioconda/linux-64::mafft-7.475-h779adbc_1
  make               conda-forge/linux-64::make-4.3-hd18ef5c_1
  markupsafe         conda-forge/linux-64::markupsafe-1.1.1-py38h497a2fe_3
  matplotlib         conda-forge/linux-64::matplotlib-3.4.1-py38h578d9bd_0
  matplotlib-base    conda-forge/linux-64::matplotlib-base-3.4.1-py38hcc49a3a_0
  mistune            conda-forge/linux-64::mistune-0.8.4-py38h497a2fe_1003
  more-itertools     conda-forge/noarch::more-itertools-8.7.0-pyhd8ed1ab_1
  msgpack-python     conda-forge/linux-64::msgpack-python-1.0.2-py38h1fd1430_1
  mysql-common       conda-forge/linux-64::mysql-common-8.0.23-ha770c72_2
  mysql-libs         conda-forge/linux-64::mysql-libs-8.0.23-h935591d_2
  natsort            conda-forge/noarch::natsort-7.1.1-pyhd8ed1ab_0
  nbclient           conda-forge/noarch::nbclient-0.5.3-pyhd8ed1ab_0
  nbconvert          conda-forge/linux-64::nbconvert-6.0.7-py38h578d9bd_3
  nbformat           conda-forge/noarch::nbformat-5.1.3-pyhd8ed1ab_0
  ncurses            conda-forge/linux-64::ncurses-6.2-h58526e2_4
  nest-asyncio       conda-forge/noarch::nest-asyncio-1.5.1-pyhd8ed1ab_0
  networkx           conda-forge/noarch::networkx-2.5.1-pyhd8ed1ab_0
  nodejs             conda-forge/linux-64::nodejs-15.14.0-h92b4a50_0
  nose               conda-forge/noarch::nose-1.3.7-py_1006
  notebook           conda-forge/noarch::notebook-6.3.0-pyha770c72_1
  nspr               conda-forge/linux-64::nspr-4.30-h9c3ff4c_0
  nss                conda-forge/linux-64::nss-3.64-hb5efdd6_0
  numpy              conda-forge/linux-64::numpy-1.20.2-py38h9894fe3_0
  olefile            conda-forge/noarch::olefile-0.46-pyh9f0ad1d_1
  openblas           conda-forge/linux-64::openblas-0.3.12-pthreads_h04b7a96_1
  openjdk            conda-forge/linux-64::openjdk-11.0.1-h516909a_1016
  openjpeg           conda-forge/linux-64::openjpeg-2.4.0-hb52868f_1
  openssl            conda-forge/linux-64::openssl-1.1.1k-h7f98852_0
  packaging          conda-forge/noarch::packaging-20.9-pyh44b312d_0
  pandas             conda-forge/linux-64::pandas-1.2.4-py38h1abd341_0
  pandoc             conda-forge/linux-64::pandoc-2.12-h7f98852_0
  pandocfilters      conda-forge/noarch::pandocfilters-1.4.2-py_1
  pango              conda-forge/linux-64::pango-1.48.4-hb8ff022_1
  parso              conda-forge/noarch::parso-0.8.2-pyhd8ed1ab_0
  patsy              conda-forge/noarch::patsy-0.5.1-py_0
  pcre               conda-forge/linux-64::pcre-8.44-he1b5a44_0
  pcre2              conda-forge/linux-64::pcre2-10.36-h032f7d1_1
  perl               conda-forge/linux-64::perl-5.26.2-h36c2ea0_1008
  perl-app-cpanminus bioconda/linux-64::perl-app-cpanminus-1.7044-pl526_1
  perl-archive-tar   bioconda/linux-64::perl-archive-tar-2.32-pl526_0
  perl-base          bioconda/linux-64::perl-base-2.23-pl526_1
  perl-business-isbn bioconda/linux-64::perl-business-isbn-3.004-pl526_0
  perl-business-isb~ bioconda/linux-64::perl-business-isbn-data-20140910.003-pl526_0
  perl-carp          bioconda/linux-64::perl-carp-1.38-pl526_3
  perl-common-sense  bioconda/linux-64::perl-common-sense-3.74-pl526_2
  perl-compress-raw~ bioconda/linux-64::perl-compress-raw-bzip2-2.087-pl526he1b5a44_0
  perl-compress-raw~ bioconda/linux-64::perl-compress-raw-zlib-2.087-pl526hc9558a2_0
  perl-constant      bioconda/linux-64::perl-constant-1.33-pl526_1
  perl-data-dumper   bioconda/linux-64::perl-data-dumper-2.173-pl526_0
  perl-digest-hmac   bioconda/linux-64::perl-digest-hmac-1.03-pl526_3
  perl-digest-md5    bioconda/linux-64::perl-digest-md5-2.55-pl526_0
  perl-encode        bioconda/linux-64::perl-encode-2.88-pl526_1
  perl-encode-locale bioconda/linux-64::perl-encode-locale-1.05-pl526_6
  perl-exporter      bioconda/linux-64::perl-exporter-5.72-pl526_1
  perl-exporter-tiny bioconda/linux-64::perl-exporter-tiny-1.002001-pl526_0
  perl-extutils-mak~ bioconda/linux-64::perl-extutils-makemaker-7.36-pl526_1
  perl-file-listing  bioconda/linux-64::perl-file-listing-6.04-pl526_1
  perl-file-path     bioconda/linux-64::perl-file-path-2.16-pl526_0
  perl-file-temp     bioconda/linux-64::perl-file-temp-0.2304-pl526_2
  perl-html-parser   bioconda/linux-64::perl-html-parser-3.72-pl526h6bb024c_5
  perl-html-tagset   bioconda/linux-64::perl-html-tagset-3.20-pl526_3
  perl-html-tree     bioconda/linux-64::perl-html-tree-5.07-pl526_1
  perl-http-cookies  bioconda/linux-64::perl-http-cookies-6.04-pl526_0
  perl-http-daemon   bioconda/linux-64::perl-http-daemon-6.01-pl526_1
  perl-http-date     bioconda/linux-64::perl-http-date-6.02-pl526_3
  perl-http-message  bioconda/linux-64::perl-http-message-6.18-pl526_0
  perl-http-negotia~ bioconda/linux-64::perl-http-negotiate-6.01-pl526_3
  perl-io-compress   bioconda/linux-64::perl-io-compress-2.087-pl526he1b5a44_0
  perl-io-html       bioconda/linux-64::perl-io-html-1.001-pl526_2
  perl-io-socket-ssl bioconda/linux-64::perl-io-socket-ssl-2.066-pl526_0
  perl-io-zlib       bioconda/linux-64::perl-io-zlib-1.10-pl526_2
  perl-json          bioconda/linux-64::perl-json-4.02-pl526_0
  perl-json-xs       bioconda/linux-64::perl-json-xs-2.34-pl526h6bb024c_3
  perl-libwww-perl   bioconda/noarch::perl-libwww-perl-6.39-pl526_0
  perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-0.428-pl526_1
  perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-xs-0.428-pl526_0
  perl-lwp-mediatyp~ bioconda/linux-64::perl-lwp-mediatypes-6.04-pl526_0
  perl-lwp-protocol~ bioconda/linux-64::perl-lwp-protocol-https-6.07-pl526_4
  perl-mime-base64   bioconda/linux-64::perl-mime-base64-3.15-pl526_1
  perl-mozilla-ca    bioconda/linux-64::perl-mozilla-ca-20180117-pl526_1
  perl-net-http      bioconda/noarch::perl-net-http-6.19-pl526_0
  perl-net-ssleay    bioconda/linux-64::perl-net-ssleay-1.88-pl526h90d6eec_0
  perl-ntlm          bioconda/linux-64::perl-ntlm-1.09-pl526_4
  perl-parent        bioconda/linux-64::perl-parent-0.236-pl526_1
  perl-pathtools     bioconda/linux-64::perl-pathtools-3.75-pl526h14c3975_1
  perl-scalar-list-~ bioconda/linux-64::perl-scalar-list-utils-1.52-pl526h516909a_0
  perl-socket        bioconda/linux-64::perl-socket-2.027-pl526_1
  perl-storable      bioconda/linux-64::perl-storable-3.15-pl526h14c3975_0
  perl-test-require~ bioconda/linux-64::perl-test-requiresinternet-0.05-pl526_0
  perl-time-local    bioconda/linux-64::perl-time-local-1.28-pl526_1
  perl-try-tiny      bioconda/linux-64::perl-try-tiny-0.30-pl526_1
  perl-types-serial~ bioconda/linux-64::perl-types-serialiser-1.0-pl526_2
  perl-uri           bioconda/linux-64::perl-uri-1.76-pl526_0
  perl-www-robotrul~ bioconda/linux-64::perl-www-robotrules-6.02-pl526_3
  perl-xml-namespac~ bioconda/linux-64::perl-xml-namespacesupport-1.12-pl526_0
  perl-xml-parser    conda-forge/linux-64::perl-xml-parser-2.44_01-pl5262hc3e0081_1002
  perl-xml-sax       bioconda/noarch::perl-xml-sax-1.02-pl526_0
  perl-xml-sax-base  bioconda/linux-64::perl-xml-sax-base-1.09-pl526_0
  perl-xml-sax-expat bioconda/linux-64::perl-xml-sax-expat-0.51-pl526_3
  perl-xml-simple    bioconda/linux-64::perl-xml-simple-2.25-pl526_1
  perl-xsloader      bioconda/linux-64::perl-xsloader-0.24-pl526_0
  pexpect            conda-forge/noarch::pexpect-4.8.0-pyh9f0ad1d_2
  pickleshare        conda-forge/noarch::pickleshare-0.7.5-py_1003
  pigz               conda-forge/linux-64::pigz-2.6-h27826a3_0
  pillow             conda-forge/linux-64::pillow-8.1.2-py38ha0e1e83_1
  pip                conda-forge/noarch::pip-21.0.1-pyhd8ed1ab_0
  pixman             conda-forge/linux-64::pixman-0.40.0-h36c2ea0_0
  pluggy             conda-forge/linux-64::pluggy-0.13.1-py38h578d9bd_4
  prometheus_client  conda-forge/noarch::prometheus_client-0.10.1-pyhd8ed1ab_0
  prompt-toolkit     conda-forge/noarch::prompt-toolkit-3.0.18-pyha770c72_0
  psutil             conda-forge/linux-64::psutil-5.8.0-py38h497a2fe_1
  pthread-stubs      conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001
  ptyprocess         conda-forge/noarch::ptyprocess-0.7.0-pyhd3deb0d_0
  py                 conda-forge/noarch::py-1.10.0-pyhd3deb0d_0
  pycparser          conda-forge/noarch::pycparser-2.20-pyh9f0ad1d_2
  pygments           conda-forge/noarch::pygments-2.8.1-pyhd8ed1ab_0
  pyopenssl          conda-forge/noarch::pyopenssl-20.0.1-pyhd8ed1ab_0
  pyparsing          conda-forge/noarch::pyparsing-2.4.7-pyh9f0ad1d_0
  pyqt               conda-forge/linux-64::pyqt-5.12.3-py38h578d9bd_7
  pyqt-impl          conda-forge/linux-64::pyqt-impl-5.12.3-py38h7400c14_7
  pyqt5-sip          conda-forge/linux-64::pyqt5-sip-4.19.18-py38h709712a_7
  pyqtchart          conda-forge/linux-64::pyqtchart-5.12-py38h7400c14_7
  pyqtwebengine      conda-forge/linux-64::pyqtwebengine-5.12.1-py38h7400c14_7
  pyrsistent         conda-forge/linux-64::pyrsistent-0.17.3-py38h497a2fe_2
  pysocks            conda-forge/linux-64::pysocks-1.7.1-py38h578d9bd_3
  pytest             conda-forge/linux-64::pytest-6.2.3-py38h578d9bd_0
  python             conda-forge/linux-64::python-3.8.8-hffdb5ce_0_cpython
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  python-isal        conda-forge/linux-64::python-isal-0.10.0-py38h497a2fe_0
  python_abi         conda-forge/linux-64::python_abi-3.8-1_cp38
  pytz               conda-forge/noarch::pytz-2021.1-pyhd8ed1ab_0
  pyyaml             conda-forge/linux-64::pyyaml-5.4.1-py38h497a2fe_0
  pyzmq              conda-forge/linux-64::pyzmq-22.0.3-py38h2035c66_1
  q2-alignment       qiime2/latest/tested/linux-64::q2-alignment-2021.4.0-py38_0
  q2-composition     qiime2/latest/tested/linux-64::q2-composition-2021.4.0-py38_0
  q2-cutadapt        qiime2/latest/tested/linux-64::q2-cutadapt-2021.4.0-py38_0
  q2-dada2           qiime2/latest/tested/linux-64::q2-dada2-2021.4.0-py38_0
  q2-deblur          qiime2/latest/tested/linux-64::q2-deblur-2021.4.0-py38_0
  q2-demux           qiime2/latest/tested/linux-64::q2-demux-2021.4.0-py38_0
  q2-diversity       qiime2/latest/tested/linux-64::q2-diversity-2021.4.0-py38_0
  q2-diversity-lib   qiime2/latest/tested/linux-64::q2-diversity-lib-2021.4.0-0
  q2-emperor         qiime2/latest/tested/linux-64::q2-emperor-2021.4.0-py38_0
  q2-feature-classi~ qiime2/latest/tested/linux-64::q2-feature-classifier-2021.4.0-py38_0
  q2-feature-table   qiime2/latest/tested/linux-64::q2-feature-table-2021.4.0-py38_0
  q2-fragment-inser~ qiime2/latest/tested/linux-64::q2-fragment-insertion-2021.4.0-py38_0
  q2-gneiss          qiime2/latest/tested/linux-64::q2-gneiss-2021.4.0-py38_0
  q2-longitudinal    qiime2/latest/tested/linux-64::q2-longitudinal-2021.4.0-py38_0
  q2-metadata        qiime2/latest/tested/linux-64::q2-metadata-2021.4.0-py38_0
  q2-phylogeny       qiime2/latest/tested/linux-64::q2-phylogeny-2021.4.0-py38_0
  q2-quality-control qiime2/latest/tested/linux-64::q2-quality-control-2021.4.0-py38_0
  q2-quality-filter  qiime2/latest/tested/linux-64::q2-quality-filter-2021.4.0-py38_0
  q2-sample-classif~ qiime2/latest/tested/linux-64::q2-sample-classifier-2021.4.0-py38_0
  q2-taxa            qiime2/latest/tested/linux-64::q2-taxa-2021.4.0-py38_0
  q2-types           qiime2/latest/tested/linux-64::q2-types-2021.4.0-py38_0
  q2-vsearch         qiime2/latest/tested/linux-64::q2-vsearch-2021.4.0-py38_0
  q2galaxy           qiime2/latest/tested/linux-64::q2galaxy-2021.4.0-py38_0
  q2templates        qiime2/latest/tested/linux-64::q2templates-2021.4.0-py38_0
  qiime2             qiime2/latest/tested/linux-64::qiime2-2021.4.0-py38_0
  qt                 conda-forge/linux-64::qt-5.12.9-hda022c4_4
  r-assertthat       conda-forge/noarch::r-assertthat-0.2.1-r40hc72bb7e_2
  r-backports        conda-forge/linux-64::r-backports-1.2.1-r40hcfec24a_0
  r-base             conda-forge/linux-64::r-base-4.0.3-h349a78a_8
  r-bh               conda-forge/noarch::r-bh-1.75.0_0-r40hc72bb7e_0
  r-bitops           conda-forge/linux-64::r-bitops-1.0_6-r40hcdcec82_1004
  r-brio             conda-forge/linux-64::r-brio-1.1.1-r40hcfec24a_0
  r-callr            conda-forge/noarch::r-callr-3.6.0-r40hc72bb7e_0
  r-cli              conda-forge/noarch::r-cli-2.4.0-r40hc72bb7e_0
  r-cluster          conda-forge/linux-64::r-cluster-2.1.1-r40h859d828_0
  r-colorspace       conda-forge/linux-64::r-colorspace-2.0_0-r40h9e2df91_0
  r-crayon           conda-forge/noarch::r-crayon-1.4.1-r40hc72bb7e_0
  r-desc             conda-forge/noarch::r-desc-1.3.0-r40hc72bb7e_0
  r-diffobj          conda-forge/linux-64::r-diffobj-0.3.3-r40hcfec24a_0
  r-digest           conda-forge/linux-64::r-digest-0.6.27-r40h03ef668_0
  r-ellipsis         conda-forge/linux-64::r-ellipsis-0.3.1-r40hcdcec82_0
  r-evaluate         conda-forge/noarch::r-evaluate-0.14-r40hc72bb7e_2
  r-fansi            conda-forge/linux-64::r-fansi-0.4.2-r40hcfec24a_0
  r-farver           conda-forge/linux-64::r-farver-2.1.0-r40h03ef668_0
  r-formatr          conda-forge/noarch::r-formatr-1.9-r40hc72bb7e_0
  r-futile.logger    conda-forge/noarch::r-futile.logger-1.4.3-r40hc72bb7e_1003
  r-futile.options   conda-forge/noarch::r-futile.options-1.0.1-r40hc72bb7e_1002
  r-ggplot2          conda-forge/noarch::r-ggplot2-3.3.3-r40hc72bb7e_0
  r-glue             conda-forge/linux-64::r-glue-1.4.2-r40hcfec24a_0
  r-gtable           conda-forge/noarch::r-gtable-0.3.0-r40hc72bb7e_3
  r-hwriter          conda-forge/noarch::r-hwriter-1.3.2-r40hc72bb7e_1003
  r-isoband          conda-forge/linux-64::r-isoband-0.2.4-r40h03ef668_0
  r-jpeg             conda-forge/linux-64::r-jpeg-0.1_8.1-r40hcfec24a_1
  r-jsonlite         conda-forge/linux-64::r-jsonlite-1.7.2-r40hcfec24a_0
  r-labeling         conda-forge/noarch::r-labeling-0.4.2-r40hc72bb7e_0
  r-lambda.r         conda-forge/noarch::r-lambda.r-1.2.4-r40hc72bb7e_1
  r-lattice          conda-forge/linux-64::r-lattice-0.20_41-r40hcfec24a_3
  r-latticeextra     conda-forge/noarch::r-latticeextra-0.6_29-r40hc72bb7e_1
  r-lifecycle        conda-forge/noarch::r-lifecycle-1.0.0-r40hc72bb7e_0
  r-magrittr         conda-forge/linux-64::r-magrittr-2.0.1-r40hcfec24a_1
  r-mass             conda-forge/linux-64::r-mass-7.3_53.1-r40hcfec24a_0
  r-matrix           conda-forge/linux-64::r-matrix-1.3_2-r40he454529_0
  r-matrixstats      conda-forge/linux-64::r-matrixstats-0.58.0-r40hcfec24a_0
  r-mgcv             conda-forge/linux-64::r-mgcv-1.8_34-r40he454529_0
  r-munsell          conda-forge/noarch::r-munsell-0.5.0-r40hc72bb7e_1003
  r-nlme             conda-forge/linux-64::r-nlme-3.1_152-r40h859d828_0
  r-permute          conda-forge/noarch::r-permute-0.9_5-r40h785f33e_3
  r-pillar           conda-forge/noarch::r-pillar-1.6.0-r40hc72bb7e_0
  r-pkgconfig        conda-forge/noarch::r-pkgconfig-2.0.3-r40hc72bb7e_1
  r-pkgload          conda-forge/linux-64::r-pkgload-1.2.1-r40h03ef668_0
  r-plyr             conda-forge/linux-64::r-plyr-1.8.6-r40h03ef668_1
  r-png              conda-forge/linux-64::r-png-0.1_7-r40hcfec24a_1004
  r-praise           conda-forge/noarch::r-praise-1.0.0-r40hc72bb7e_1004
  r-processx         conda-forge/linux-64::r-processx-3.5.1-r40hcfec24a_0
  r-ps               conda-forge/linux-64::r-ps-1.6.0-r40hcfec24a_0
  r-r6               conda-forge/noarch::r-r6-2.5.0-r40hc72bb7e_0
  r-rcolorbrewer     conda-forge/noarch::r-rcolorbrewer-1.1_2-r40h785f33e_1003
  r-rcpp             conda-forge/linux-64::r-rcpp-1.0.6-r40h03ef668_0
  r-rcppparallel     conda-forge/linux-64::r-rcppparallel-5.1.2-r40h03ef668_0
  r-rcurl            conda-forge/linux-64::r-rcurl-1.98_1.3-r40hcfec24a_0
  r-rematch2         conda-forge/noarch::r-rematch2-2.1.2-r40hc72bb7e_1
  r-reshape2         conda-forge/linux-64::r-reshape2-1.4.4-r40h03ef668_1
  r-rlang            conda-forge/linux-64::r-rlang-0.4.10-r40hcfec24a_0
  r-rprojroot        conda-forge/noarch::r-rprojroot-2.0.2-r40hc72bb7e_0
  r-rstudioapi       conda-forge/noarch::r-rstudioapi-0.13-r40hc72bb7e_0
  r-scales           conda-forge/noarch::r-scales-1.1.1-r40hc72bb7e_0
  r-snow             conda-forge/noarch::r-snow-0.4_3-r40hc72bb7e_1002
  r-stringi          conda-forge/linux-64::r-stringi-1.5.3-r40hcabe038_1
  r-stringr          conda-forge/noarch::r-stringr-1.4.0-r40hc72bb7e_2
  r-testthat         conda-forge/linux-64::r-testthat-3.0.2-r40h03ef668_0
  r-tibble           conda-forge/linux-64::r-tibble-3.1.1-r40hcfec24a_0
  r-utf8             conda-forge/linux-64::r-utf8-1.2.1-r40hcfec24a_0
  r-vctrs            conda-forge/linux-64::r-vctrs-0.3.7-r40hcfec24a_0
  r-vegan            conda-forge/linux-64::r-vegan-2.5_7-r40h52d45c5_0
  r-viridislite      conda-forge/noarch::r-viridislite-0.4.0-r40hc72bb7e_0
  r-waldo            conda-forge/noarch::r-waldo-0.2.5-r40hc72bb7e_0
  r-withr            conda-forge/noarch::r-withr-2.4.2-r40hc72bb7e_0
  r-zeallot          conda-forge/noarch::r-zeallot-0.1.0-r40hc72bb7e_1002
  raxml              bioconda/linux-64::raxml-8.2.12-h779adbc_3
  readline           conda-forge/linux-64::readline-8.1-h46c0cb4_0
  requests           conda-forge/noarch::requests-2.25.1-pyhd3deb0d_0
  samtools           bioconda/linux-64::samtools-1.12-h9aed4be_1
  scikit-bio         conda-forge/linux-64::scikit-bio-0.5.6-py38h0b5ebd8_4
  scikit-learn       conda-forge/linux-64::scikit-learn-0.24.1-py38h658cfdd_0
  scipy              conda-forge/linux-64::scipy-1.6.2-py38h7b17777_0
  seaborn            conda-forge/noarch::seaborn-0.11.1-hd8ed1ab_1
  seaborn-base       conda-forge/noarch::seaborn-base-0.11.1-pyhd8ed1ab_1
  sed                conda-forge/linux-64::sed-4.8-he412f7d_0
  send2trash         conda-forge/noarch::send2trash-1.5.0-py_0
  sepp               bioconda/linux-64::sepp-4.3.10-py38h3252c3a_2
  setuptools         conda-forge/linux-64::setuptools-49.6.0-py38h578d9bd_3
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0
  sortmerna          bioconda/linux-64::sortmerna-2.0-he860b03_4
  sqlite             conda-forge/linux-64::sqlite-3.35.4-h74cdb3f_0
  statsmodels        conda-forge/linux-64::statsmodels-0.12.2-py38h5c078b8_0
  sysroot_linux-64   conda-forge/noarch::sysroot_linux-64-2.12-h77966d4_13
  tbb                conda-forge/linux-64::tbb-2020.2-h4bd325d_4
  terminado          conda-forge/linux-64::terminado-0.9.4-py38h578d9bd_0
  testpath           conda-forge/noarch::testpath-0.4.4-py_0
  threadpoolctl      conda-forge/noarch::threadpoolctl-2.1.0-pyh5ca1d4c_0
  tk                 conda-forge/linux-64::tk-8.6.10-h21135ba_1
  tktable            conda-forge/linux-64::tktable-2.10-hb7b940f_3
  toml               conda-forge/noarch::toml-0.10.2-pyhd8ed1ab_0
  tornado            conda-forge/linux-64::tornado-6.1-py38h497a2fe_1
  traitlets          conda-forge/noarch::traitlets-5.0.5-py_0
  typing_extensions  conda-forge/noarch::typing_extensions-3.7.4.3-py_0
  tzlocal            conda-forge/noarch::tzlocal-2.1-pyh9f0ad1d_0
  unifrac            bioconda/linux-64::unifrac-0.20.2-py38hc37a69a_1
  urllib3            conda-forge/noarch::urllib3-1.26.4-pyhd8ed1ab_0
  vsearch            bioconda/linux-64::vsearch-2.7.0-1
  wcwidth            conda-forge/noarch::wcwidth-0.2.5-pyh9f0ad1d_2
  webencodings       conda-forge/noarch::webencodings-0.5.1-py_1
  wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
  widgetsnbextension conda-forge/linux-64::widgetsnbextension-3.5.1-py38h578d9bd_4
  xopen              conda-forge/linux-64::xopen-1.1.0-py38h578d9bd_2
  xorg-kbproto       conda-forge/linux-64::xorg-kbproto-1.0.7-h7f98852_1002
  xorg-libice        conda-forge/linux-64::xorg-libice-1.0.10-h7f98852_0
  xorg-libsm         conda-forge/linux-64::xorg-libsm-1.2.3-hd9c2040_1000
  xorg-libx11        conda-forge/linux-64::xorg-libx11-1.7.0-h7f98852_0
  xorg-libxau        conda-forge/linux-64::xorg-libxau-1.0.9-h7f98852_0
  xorg-libxdmcp      conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0
  xorg-libxext       conda-forge/linux-64::xorg-libxext-1.3.4-h7f98852_1
  xorg-libxrender    conda-forge/linux-64::xorg-libxrender-0.9.10-h7f98852_1003
  xorg-libxt         conda-forge/linux-64::xorg-libxt-1.2.1-h7f98852_2
  xorg-renderproto   conda-forge/linux-64::xorg-renderproto-0.11.1-h7f98852_1002
  xorg-xextproto     conda-forge/linux-64::xorg-xextproto-7.3.0-h7f98852_1002
  xorg-xproto        conda-forge/linux-64::xorg-xproto-7.0.31-h7f98852_1007
  xz                 conda-forge/linux-64::xz-5.2.5-h516909a_1
  yaml               conda-forge/linux-64::yaml-0.2.5-h516909a_0
  zeromq             conda-forge/linux-64::zeromq-4.3.4-h9c3ff4c_0
  zipp               conda-forge/noarch::zipp-3.4.1-pyhd8ed1ab_0
  zlib               conda-forge/linux-64::zlib-1.2.11-h516909a_1010
  zstd               conda-forge/linux-64::zstd-1.4.9-ha95c52a_0


==> /home/galaxy/logs/slurmctld.log <==
[2021-06-09T23:25:35.561] error: Could not open job state file /tmp/slurm/job_state: No such file or directory
[2021-06-09T23:25:35.561] error: NOTE: Trying backup state save file. Jobs may be lost!
[2021-06-09T23:25:35.561] No job state file (/tmp/slurm/job_state.old) found
DEBUG:urllib3.connectionpool:http://127.0.0.1:80 "POST /api/tools/qiime2_tools_export/install_dependencies?key=fakekey HTTP/1.1" 403 None
Traceback (most recent call last):
  File "/tool_deps/_conda/bin/install_tool_deps", line 10, in <module>
    sys.exit(main())
  File "/tool_deps/_conda/lib/python3.7/site-packages/ephemeris/install_tool_deps.py", line 70, in main
    _install(tool_client, tool_id)
  File "/tool_deps/_conda/lib/python3.7/site-packages/ephemeris/install_tool_deps.py", line 29, in _install
    tool_client.install_dependencies(tool_id)
  File "/tool_deps/_conda/lib/python3.7/site-packages/bioblend/galaxy/tools/__init__.py", line 114, in install_dependencies
    return self._post(payload={}, url=url)
  File "/tool_deps/_conda/lib/python3.7/site-packages/bioblend/galaxy/client.py", line 173, in _post
    files_attached=files_attached)
  File "/tool_deps/_conda/lib/python3.7/site-packages/bioblend/galaxyclient.py", line 132, in make_post_request
    body=r.text, status_code=r.status_code)
bioblend.ConnectionError: Unexpected HTTP status code: 403: <html>
<head><title>403 Forbidden</title></head>
<body bgcolor="white">
<center><h1>403 Forbidden</h1></center>
<hr><center>nginx/1.14.0 (Ubuntu)</center>
</body>
</html>

The command '/bin/sh -c /usr/bin/startup     & /tool_deps/_conda/bin/galaxy-wait -g http://127.0.0.1       && sleep 60       && /tool_deps
/_conda/bin/install_tool_deps -v          -t $GALAXY_CONFIG_TOOL_CONFIG_FILE          -g http://127.0.0.1          -u $GALAXY_DEFAULT_ADMI
N_EMAIL          -p $GALAXY_DEFAULT_ADMIN_PASSWORD' returned a non-zero code: 1

(Logs are interleaved here as the startup script is running in the background.)

I imagine what I am doing isn't exactly intended, but after looking through ephemeris and bioblend, I really don't see why this isn't working. When I did not wait for the admin user to be created (with the additional hacky sleep call), I would recieve a 403 immediately, which made sense, and the conda install never started. Here, we can see I clearly passed the @web.require_admin decorator at first... as the conda install proceeds, but then I am getting a 403 after everything appears to have finished.

I have tried using ephemeris with the API key instead, but it is the same situation. Interestingly, at some point the endpoint recieves the API key even if I don't use that in ephemeris (seen above). I can't figure out where in bioblend this even happens, but that might be a clue?
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@ebolyen