python 3.8 and futures 3.1.1 not working well together

[gad83]

I am having an issue building galaxy-server:

Collecting futures==3.1.1
Downloading https://wheels.galaxyproject.org/simple/futures/futures-3.1.1.tar.gz (26 kB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /galaxy/.venv/bin/python3 -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-tevv5o12/futures_eb8aed7abd5f419eb0d959748ce75ea9/setup.py'"'"'; file='"'"'/tmp/pip-install-tevv5o12/futures_eb8aed7abd5f419eb0d959748ce75ea9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-p_hff0yy
cwd: /tmp/pip-install-tevv5o12/futures_eb8aed7abd5f419eb0d959748ce75ea9/
Complete output (24 lines):
Traceback (most recent call last):
File "", line 1, in
File "/galaxy/.venv/lib/python3.8/site-packages/setuptools/init.py", line 18, in
from setuptools.dist import Distribution
File "/galaxy/.venv/lib/python3.8/site-packages/setuptools/dist.py", line 32, in
from setuptools.extern.more_itertools import unique_everseen
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 657, in _load_unlocked
File "", line 556, in module_from_spec
File "/galaxy/.venv/lib/python3.8/site-packages/setuptools/extern/init.py", line 52, in create_module
return self.load_module(spec.name)
File "/galaxy/.venv/lib/python3.8/site-packages/setuptools/extern/init.py", line 37, in load_module
import(extant)
File "/galaxy/.venv/lib/python3.8/site-packages/setuptools/_vendor/more_itertools/init.py", line 1, in
from .more import * # noqa
File "/galaxy/.venv/lib/python3.8/site-packages/setuptools/_vendor/more_itertools/more.py", line 5, in
from concurrent.futures import ThreadPoolExecutor
File "/tmp/pip-install-tevv5o12/futures_eb8aed7abd5f419eb0d959748ce75ea9/concurrent/futures/init.py", line 8, in
from concurrent.futures._base import (FIRST_COMPLETED,
File "/tmp/pip-install-tevv5o12/futures_eb8aed7abd5f419eb0d959748ce75ea9/concurrent/futures/_base.py", line 381
raise exception_type, self._exception, self._traceback
^
SyntaxError: invalid syntax

WARNING: Discarding https://wheels.galaxyproject.org/simple/futures/futures-3.1.1.tar.gz (from https://wheels.galaxyproject.org/simple/futures/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
ERROR: Could not find a version that satisfies the requirement futures==3.1.1 (from versions: 0.2.python3, 0.1, 0.2, 1.0, 2.0, 2.1, 2.1.1, 2.1.2, 2.1.3, 2.1.4, 2.1.5, 2.1.6, 2.2.0, 3.0.0, 3.0.1, 3.0.2, 3.0.3, 3.0.4, 3.0.5, 3.1.0, 3.1.1)
ERROR: No matching distribution found for futures==3.1.1
The command '/bin/sh -c apt update && apt install --no-install-recommends libcurl4-openssl-dev libssl-dev python3-dev python3-pip -y && pip3 install futures && update-alternatives --install /usr/bin/python python /usr/bin/python3 9 && mkdir "${GALAXY_ROOT}" && curl -L -s $GALAXY_REPO/archive/$GALAXY_RELEASE.tar.gz | tar xzf - --strip-components=1 -C $GALAXY_ROOT && cd $GALAXY_ROOT && ./scripts/common_startup.sh && . $GALAXY_ROOT/.venv/bin/activate && pip3 install drmaa psycopg2 pycurl pykube && pip3 install importlib-metadata importlib-resources pathlib2 ruamel.yaml.clib typing zipp && deactivate && rm -rf .ci .circleci .coveragerc .gitignore .travis.yml CITATION CODE_OF_CONDUCT.md CONTRIBUTING.md CONTRIBUTORS.md LICENSE.txt Makefile README.rst SECURITY_POLICY.md pytest.ini tox.ini client contrib doc config/plugins lib/galaxy_test test test-data .venv/lib/node_modules .venv/src/node-v10.15.3-linux-x64 .venv/include/node .venv/bin/node .venv/bin/nodeenv && /usr/bin/common_cleanup.sh' returned a non-zero code: 1
ERROR: Service 'galaxy-server' failed to build : Build failed

[gad83]

I believe they should be a condition in the file requirements.txt for the line futures==3.1.1

Can this be verified please?

[ofilangi]

I have the same error testing the master branch and 21.01,20.09 tags.

[gad83]

if you browse to https://wheels.galaxyproject.org/simple/futures/ you will find two different packages.
Is it possible we are supposed to use the other one?
If so, how can we fix this?

[mcourt01]

Has this been resolved??

I am trying to install Galaxy on a server (Ubuntu 20.04) using Ansible as per the tutorial: https://training.galaxyproject.org/training-material/topics/admin/tutorials/ansible-galaxy/tutorial.html#frequently-asked-questions and it comes up with the same error as shown above.

[jarrah42]

I am also trying to install using Ansible as per the tutorial with the same results. I'm using Ubuntu 18.04.

[jarrah42]

The tutorial uses a galaxy_commit_id of release_20.09. Updating this to release_21.09 solved this problem for me.

[mcourt01]

Thanks! Yes. This worked for me too. They probably should add a comment about this - checking for playbook updates - in the tutorial. Sent from my Verizon, Samsung Galaxy smartphone Get Outlook for Android<https://aka.ms/AAb9ysg>

…

________________________________ From: Greg Watson ***@***.***> Sent: Wednesday, January 12, 2022 8:17:12 AM To: bgruening/docker-galaxy-stable ***@***.***> Cc: Court, Michael H ***@***.***>; Comment ***@***.***> Subject: Re: [bgruening/docker-galaxy-stable] python 3.8 and futures 3.1.1 not working well together (Issue #588) The tutorial uses a galaxy_commit_id of release_20.09. Updating this to release_21.09 solved this problem for me. — Reply to this email directly, view it on GitHub<https://urldefense.com/v3/__https://github.com/bgruening/docker-galaxy-stable/issues/588*issuecomment-1011216393__;Iw!!JmPEgBY0HMszNaDT!6202BphfeU4UglTz3DFagsdlTGsH9Heod_OlcgP_-QeFzy6aM8N53vvANIHWtbtvu6M$>, or unsubscribe<https://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/AXFTBHVFJTR6SGQFNROAW43UVWSQRANCNFSM5GKB5VHA__;!!JmPEgBY0HMszNaDT!6202BphfeU4UglTz3DFagsdlTGsH9Heod_OlcgP_-QeFzy6aM8N53vvANIHWB_MQapQ$>. Triage notifications on the go with GitHub Mobile for iOS<https://urldefense.com/v3/__https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675__;!!JmPEgBY0HMszNaDT!6202BphfeU4UglTz3DFagsdlTGsH9Heod_OlcgP_-QeFzy6aM8N53vvANIHWTgGQzPE$> or Android<https://urldefense.com/v3/__https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign*3Dnotification-email*26utm_medium*3Demail*26utm_source*3Dgithub__;JSUlJSU!!JmPEgBY0HMszNaDT!6202BphfeU4UglTz3DFagsdlTGsH9Heod_OlcgP_-QeFzy6aM8N53vvANIHWpD9oZgg$>. You are receiving this because you commented.Message ID: ***@***.***>