sea-test-and-publish.yml

name: Test Sea and publish dockerfiles

on:
  push:
  pull_request:
    branches: [ master ]

  workflow_dispatch:
    inputs:
      debug_enabled:
        description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)'     
        required: false
        default: "false"
env:
  REGISTRY: ghcr.io
jobs:
  run-tests:
    runs-on: ubuntu-20.04
    strategy:
      fail-fast: false
      matrix:
        os-name: [xenial, bionic, focal, centos7, fedora32, fedora33, fedora34]
    name: Test in ${{ matrix.os-name }}
    steps:
      - run: docker --version
      - name: Git checkout
        uses: actions/checkout@v2
      - run: cd ${{ github.workspace }}
      - run: docker build . -f containers/base/Dockerfile.${{ matrix.os-name }} -t imagetest:${{ matrix.os-name }}
      - run: docker run --rm -v $PWD:$PWD -w $PWD imagetest:${{ matrix.os-name }} make test debug_opts="-g -ggdb --coverage -fprofile-arcs -ftest-coverage"
      - run: docker run --rm -v $PWD:$PWD -w $PWD imagetest:${{ matrix.os-name }} bats tests/tests.bats tests/test_flusher.bats tests/test_prefetch.bats
      - run: docker run --rm -v $PWD:$PWD -w $PWD imagetest:${{ matrix.os-name }} bash -c "MOUNT=$PWD/mount SOURCE=$PWD/source SOURCE_1=$PWD/source_1 levels=1 bash tests/setup.bash"
      - run: docker run --rm -v $PWD:$PWD -w $PWD -e SEA_HOME=$PWD -e LD_PRELOAD=$PWD/build/sea.so imagetest:${{ matrix.os-name }} tests/test_custom

      - uses: codecov/codecov-action@v1
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          fail_ci_if_error: true
          gcov_executable: docker run --rm -v $PWD:$PWD -w $PWD imagetest:${{ matrix.os-name }} gcov -abcfu build
      - name: setup tmate session
        if: ${{ failure() && github.event_name == 'workflow_dispatch' && github.event.inputs.debug_enabled == 'true' }}
        uses: mxschmitt/action-tmate@v3

  build-and-push-base-image:
    if: github.event_name != 'pull_request'
    needs: run-tests
    runs-on: ubuntu-latest
    strategy:
      matrix:
        os-name: [ xenial, bionic, focal, centos7, fedora32, fedora33, fedora34 ]
    permissions:
      contents: read
      packages: write

    steps:
      - name: Checkout repository
        uses: actions/checkout@v2

      - name: Log in to the Container registry
        uses: docker/login-action@v1
        with:
          registry: ${{ env.REGISTRY }}
          username: ${{ github.repository_owner }}
          password: ${{ secrets.GITHUB_TOKEN }}

      - name: Extract metadata (tags, labels) for Docker -  Base images
        id: meta
        uses: docker/metadata-action@v3
        with:
          images: ${{ env.REGISTRY }}/${{ github.repository_owner }}/sea-${{ matrix.os-name }}

      - name: Build and push Docker image - Base images
        uses: docker/build-push-action@v2
        with:
          context: .
          file: containers/base/Dockerfile.${{ matrix.os-name }}
          pull: true
          push: true
          tags: ${{ steps.meta.outputs.tags }}
          labels: ${{ steps.meta.outputs.labels }}

  build-and-push-application-image:
    if: github.event_name != 'pull_request'
    needs: [ run-tests, build-and-push-base-image ]
    runs-on: ubuntu-latest
    strategy:
      matrix:
        application: [ fmriprep, AFNI, fsl, HCP, SPM ]
    permissions:
      contents: read
      packages: write

    steps:
      - name: Checkout repository
        uses: actions/checkout@v2

      - name: Log in to the Container registry
        uses: docker/login-action@v1
        with:
          registry: ${{ env.REGISTRY }}
          username: ${{ github.repository_owner }}
          password: ${{ secrets.GITHUB_TOKEN }}
      - name: Extract metadata (tags, labels) for Docker - Application images
        id: meta
        uses: docker/metadata-action@v3
        with:
          images: ${{ env.REGISTRY }}/${{ github.repository_owner }}/sea-${{ matrix.application }}

      - name: Build and push Docker image
        uses: docker/build-push-action@v2
        with:
          context: .
          file: containers/applications/Dockerfile.${{ matrix.application }}
          pull: true
          push: true
          tags: ${{ steps.meta.outputs.tags }}
          labels: ${{ steps.meta.outputs.labels }}