Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

spark_bids: support extra parameters #39

Open
glatard opened this issue Sep 1, 2017 · 2 comments
Open

spark_bids: support extra parameters #39

glatard opened this issue Sep 1, 2017 · 2 comments

Comments

@glatard
Copy link
Contributor

glatard commented Sep 1, 2017

No description provided.

@glatard
Copy link
Contributor Author

glatard commented Sep 7, 2017

should be passed to spark_bids and appended to any execution of the BIDS app

@glatard
Copy link
Contributor Author

glatard commented Oct 19, 2017

  • Take ndmg as an example: https://github.com/BIDS-Apps/ndmg/blob/master/boutiques/ndmg-docker-bids.json
  • leverage the option parameter in the SparkBIDS constructor.
  • for every option in option: if option is not in [ --skip-participants, or other spark bids option ] : assume that it is an option of the Boutiques tool. Search for the corresponding command-line-flag or id in boutiques inputs. If not found: raise an error; otherwise, pass the value to boutiques.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant