Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Enhance PubTator relevance #599

Open
gromdimon opened this issue Mar 27, 2024 · 1 comment
Open

Enhance PubTator relevance #599

gromdimon opened this issue Mar 27, 2024 · 1 comment
Labels
enhancement New feature or request

Comments

@gromdimon
Copy link
Contributor

Is your feature request related to a problem? Please describe.
Currently we provide the most relevant papers from PubTator based only on searched variant itself. However, sometimes it might be usefull to add additional information (as additional variants) to yield more results.

Describe the solution you'd like
Allow adding the specific variant to yield more relevant results?

Describe alternatives you've considered
N/A

Additional context
N/A

@gromdimon gromdimon added the enhancement New feature or request label Mar 27, 2024
@holtgrewe
Copy link
Member

We could add a switch to add the variant in the search. The variant would be the one letter amino acid code when applicable (for protein coding genes).

However, that won't help int he gene overview.

I would rather recommend to show the first X words of the abstract only with a "more" link for the entries to compact things. And only display 5 entries with another "show more entries" link.

Then, add LitVar for the seqvars display as this is from the pubtator authors and they have put in more work than we could to associate variants...

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

2 participants