molecular_entity_schema.json

{
  "id": "http://biocaddie.github.io/dats/molecular_entity_schema.json#",
  "$schema": "http://json-schema.org/draft-04/schema",
  "title": "DATS molecular entity schema",
  "description": "A physical entity of molecular scales such as proteins, nucleic acids, chemical materials. They can be abiotic, biological or synthetic origin.",
  "type": "object",
  "properties": {
    "@context": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "object"
        }
      ]
    },
    "@type": { "type": "string", "enum": [ "MolecularEntity" ]},
    "identifier": {
      "$ref": "http://biocaddie.github.io/dats/identifier_info_schema.json#"
    },
    "alternateIdentifiers": {
      "description": "Alternate identifiers for the molecular entity.",
      "type": "array",
      "items": {
        "$ref": "http://biocaddie.github.io/dats/alternate_identifier_info_schema.json#"
      }
    },
    "relatedIdentifiers": {
      "description": "Related identifiers for the molecular entity.",
      "type": "array",
      "items": {
        "$ref": "http://biocaddie.github.io/dats/related_identifier_info_schema.json#"
      }
    },
    "name": {
      "description": "The name of the molecular entity.",
      "type" :  "string"
    },
    "taxonomy" : {
      "description": "The taxonomic information for this material (ideally specified from a controlled vocabulary/ontology).",
      "type": "array",
      "items": {
        "$ref": "http://biocaddie.github.io/dats/taxonomic_info_schema.json#"
      }
    },
    "characteristics" : {
      "description": "The characteristic information or attributes denoting the material.",
      "type" : "array",
      "items" : {
        "oneOf": [
          {"$ref": "http://biocaddie.github.io/dats/dimension_schema.json#"},
          {"$ref": "http://biocaddie.github.io/dats/material_schema.json#"}
        ]
      }
    },
    "structure": {
      "description": "The primary sequence of the molecular entity (e.g. inchi code;DNA sequence in FASTA format)",
      "type" :  "string"
    },
    "roles" : {
      "description": "The roles played by the molecular entity.",
      "type" : "array",
      "items" : {
        "$ref": "http://biocaddie.github.io/dats/annotation_schema.json#"
      }
    },
    "extraProperties": {
      "description": "Extra properties that do not fit in the previous specified attributes. ",
      "type": "array",
      "items": {
        "$ref" : "http://biocaddie.github.io/dats/category_values_pair_schema.json#"
      }
    }
  },
  "additionalProperties": false,
  "required": [ "name" ]
}