diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 6891156..8d5b6d2 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -19,7 +19,7 @@ jobs: - name: Setup Nextflow uses: nf-core/setup-nextflow@v1 with: - version: "24.04.4" + version: "24.10.0" - name: Install nf-test run: | diff --git a/.gitignore b/.gitignore index b9f9de4..0f680b1 100644 --- a/.gitignore +++ b/.gitignore @@ -7,3 +7,4 @@ trace* logs/* output*/* .nextflow* +.nf-test* diff --git a/nextflow.config b/nextflow.config index c019209..ce25d7d 100644 --- a/nextflow.config +++ b/nextflow.config @@ -10,7 +10,7 @@ manifest { author = """Luca Cozzuto, Federica Mantica, Toni Hermoso Pulido""" homePage = 'https://github.com/biocorecrg/ExOrthist' description = """ExOrthist is a Nextflow-based pipeline to obtain groups of exon orthologous at all evolutionary timescales.""" - nextflowVersion = '!>=24.04.2' + nextflowVersion = '!>=24.10.0' version = '2.0.0' doi = 'https://doi.org/10.1186/s13059-021-02441-9' } @@ -230,4 +230,3 @@ process { ] } } - diff --git a/nextflow_schema.json b/nextflow_schema.json index 1e5787b..fb7646c 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -268,6 +268,9 @@ { "$ref": "#/$defs/plot_parameters" }, + { + "$ref": "#/$defs/institutional_config_options" + }, { "$ref": "#/$defs/notification_options" } diff --git a/tests/nextflow.config b/tests/nextflow.config index 7977a33..0c40974 100644 --- a/tests/nextflow.config +++ b/tests/nextflow.config @@ -17,7 +17,7 @@ // Impose same minimum Nextflow version as the pipeline for testing manifest { - nextflowVersion = '!>=24.04.2' + nextflowVersion = '!>=24.10.0' } // Disable all Nextflow reporting options diff --git a/tests/workflows/main.nf.test.snap b/tests/workflows/main.nf.test.snap index 34bd10d..20466b8 100644 --- a/tests/workflows/main.nf.test.snap +++ b/tests/workflows/main.nf.test.snap @@ -12,8 +12,8 @@ ], "meta": { "nf-test": "0.9.1", - "nextflow": "24.04.4" + "nextflow": "24.10.0" }, - "timestamp": "2024-10-25T19:47:18.31238939" + "timestamp": "2024-11-02T16:22:03.038334081" } } \ No newline at end of file