DESCRIPTION

Package: QTLseqr
Type: Package
Title: QTL mapping using Bulk Segregant Analysis of Next Generation Sequencing data.
Version: 0.7.5.2
Date: 12-3-2017
Authors@R: c(
    person("Ben Nathan", "Mansfeld", email = "mansfeld@msu.edu", role = c("aut", "cre")),
    person("Rebecca", "Grumet", email = "grumet@msu.edu", role = c("ths"))
    )
BugReports: https://github.com/bmansfeld/QTLseqr/issues
Description: QTLseqr performs QTL mapping using Bulk Segregant Analysis of Next Gen Sequencing data.
    The package is an R implementation of the analyses described in Magwene PM, Willis JH, Kelly JK (2011) The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing. PLOS Computational Biology 7(11): e1002255. doi: 10.1371/journal.pcbi.1002255 and Takagi, H., Abe, A., Yoshida, K., Kosugi, S., Natsume, S., Mitsuoka, C., Uemura, A., Utsushi,H., Tamiru, M., Takuno, S., Innan, H., Cano, L. M., Kamoun, S. and Terauchi, R. (2013), QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations. *Plant J*, 74: 174–183. doi:10.1111/tpj.12105
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports:
    modeest (>= 2.3.2),
    ggplot2 (>= 2.2.0),
    gtools,
    dplyr,
    readr,
    tidyr,
    Rcpp,
    locfit
Suggests:
    knitr,
    rmarkdown,
    kableExtra,
    Yang2013data
RoxygenNote: 6.1.1
biocViews: Software, Sequencing, Visualization
VignetteBuilder: knitr
LinkingTo: Rcpp