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Incorrect genotype conversion #3

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ValiumBear opened this issue Jan 11, 2024 · 0 comments
Open

Incorrect genotype conversion #3

ValiumBear opened this issue Jan 11, 2024 · 0 comments

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@ValiumBear
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ValiumBear commented Jan 11, 2024 •
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Some variants have incorrect genotype in the result.
Example with rs2235544:
23andme CSV: CC
GeneCodex result: AA
More SNPs: rs1801282 (CC vs CG), rs7754840 (CG vs CC)

https://snpedia.com/index.php/Orientation
https://snpedia.com/index.php/Ambiguous_flip

Not sure it can be fixed.
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@ValiumBear