From c9f438c11357bac94e54ac3b67bdb8735850d53b Mon Sep 17 00:00:00 2001
From: Zitong-Chen-16 <zitong@broadinstitute.org>
Date: Fri, 31 May 2024 16:04:41 -0400
Subject: [PATCH] add config files

---
 .../inputs/configs/batch4.json                            | 5 +++++
 .../inputs/configs/batch6.json                            | 8 ++++++++
 .../inputs/configs/batch7.json                            | 8 ++++++++
 .../inputs/configs/batch8.json                            | 8 ++++++++
 4 files changed, 29 insertions(+)
 create mode 100644 6.downstream_analysis_snakemake/inputs/configs/batch4.json
 create mode 100644 6.downstream_analysis_snakemake/inputs/configs/batch6.json
 create mode 100644 6.downstream_analysis_snakemake/inputs/configs/batch7.json
 create mode 100644 6.downstream_analysis_snakemake/inputs/configs/batch8.json

diff --git a/6.downstream_analysis_snakemake/inputs/configs/batch4.json b/6.downstream_analysis_snakemake/inputs/configs/batch4.json
new file mode 100644
index 0000000..5cead48
--- /dev/null
+++ b/6.downstream_analysis_snakemake/inputs/configs/batch4.json
@@ -0,0 +1,5 @@
+{
+    "Metadata_Batch": "2023-12-15_B4A4R1",
+    "cell_count_col": "Metadata_Object_Count",
+    "parallel": true
+}
diff --git a/6.downstream_analysis_snakemake/inputs/configs/batch6.json b/6.downstream_analysis_snakemake/inputs/configs/batch6.json
new file mode 100644
index 0000000..95fe0d8
--- /dev/null
+++ b/6.downstream_analysis_snakemake/inputs/configs/batch6.json
@@ -0,0 +1,8 @@
+{
+    "Metadata_Batch": "2023-12-21_B6A3R2",
+    "cell_count_col": "Metadata_Object_Count",
+    "parallel": true,
+    "pipeline": "profiles_tcdropped_filtered_var_mad_outlier_featselect",
+    "transfection_col": "Metadata_node_type",
+    "trasfection_pert": ["TC"]
+}
diff --git a/6.downstream_analysis_snakemake/inputs/configs/batch7.json b/6.downstream_analysis_snakemake/inputs/configs/batch7.json
new file mode 100644
index 0000000..9cc590e
--- /dev/null
+++ b/6.downstream_analysis_snakemake/inputs/configs/batch7.json
@@ -0,0 +1,8 @@
+{
+    "Metadata_Batch": "2024_01_23_Batch_7",
+    "cell_count_col": "Metadata_Object_Count",
+    "parallel": true,
+    "pipeline": "profiles_tcdropped_filtered_var_mad_outlier_featselect",
+    "transfection_col": "Metadata_control_type",
+    "trasfection_pert": ["TC"]
+}
diff --git a/6.downstream_analysis_snakemake/inputs/configs/batch8.json b/6.downstream_analysis_snakemake/inputs/configs/batch8.json
new file mode 100644
index 0000000..b1132a2
--- /dev/null
+++ b/6.downstream_analysis_snakemake/inputs/configs/batch8.json
@@ -0,0 +1,8 @@
+{
+    "Metadata_Batch": "2024_02_06_Batch_8",
+    "cell_count_col": "Metadata_Object_Count",
+    "parallel": true,
+    "pipeline": "profiles_tcdropped_filtered_var_mad_outlier_featselect",
+    "transfection_col": "Metadata_control_type",
+    "trasfection_pert": ["TC"]
+}