cpg0014-jump-adipocyte

[ErinWeisbart]

Segmentation/ Feature extraction is being performed by Erin in Cimini lab
Profile creation is being performed by Erin in Cimini lab
Data can be public in RODA Immediately

Update as generated:
profiler repo = https://github.com/jump-cellpainting/cpg0014-JUMP-adipocyte
[Link to publication repo]
cellpainting-gallery identifier = cpg0014-jump-adipocyte

• Metadata collection form filled out by collaborator or Imaging Platform member (https://airtable.com/shrVxz9DcoMlDoCBI)
• Metadata completely filled out in Project Profiler Database (Imaging Platform internal use only)
• Segmentation/Feature extraction complete
• Profiling complete

Transfer to CellPainting Gallery:

• Upload data to RODA (is private by default)
• Run validation script to ensure completion (https://github.com/jump-cellpainting/data-validation)
• Update cellpainting-gallery/README.md
• Make RODA entry public

If data is being published, prepare for publication:

• Run Distributed-BioFormats2Raw to create .ome.zarr files
• Upload (meta)data to IDR (images remain hosted in cellpainting-gallery).

Once published:

• Make IDR entry public
• Update cellpainting-gallery/README.md and open-data-registry/cellpainting-gallery.yml to reflect publication