From 7a9d105e3c0d5578775509af7142b6fe1670a0fc Mon Sep 17 00:00:00 2001 From: Aaron Hatcher Date: Wed, 20 Mar 2024 15:23:06 -0400 Subject: [PATCH] suffering a file name clash and overriding the same file. Changing to make file names unique --- scripts/variantstore/wdl/GvsImportGenomes.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/variantstore/wdl/GvsImportGenomes.wdl b/scripts/variantstore/wdl/GvsImportGenomes.wdl index 7bb329e669a..aa32afcc136 100644 --- a/scripts/variantstore/wdl/GvsImportGenomes.wdl +++ b/scripts/variantstore/wdl/GvsImportGenomes.wdl @@ -360,7 +360,7 @@ task LoadData { sample_name="${SAMPLE_NAMES_ARRAY[$i]}" # we always do our own localization - updated_input_vcf=input_vcf_$i_$sample_name.vcf.gz + updated_input_vcf=input_vcf_${i}_${sample_name}.vcf.gz gcloud storage ~{"--billing-project " + billing_project_id} cp $gs_input_vcf $updated_input_vcf gcloud storage ~{"--billing-project " + billing_project_id} cp $gs_input_vcf_index ${updated_input_vcf}.tbi # updated_input_vcf=input_vcf_$i_$sample_name.vcf.gz