unit_tests.yaml

name: unit tests

# Run the test suite on pushes (incl. merges) to main
# Run the test suite when a PR is opened, pushed to, or reopened
on:
  push:
    branches:
      - main
      - dev
  pull_request:
    types: [opened, synchronize, reopened]

jobs:
  unit_tests:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.10']
    steps:
      - name: Checkout
        uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - name: Set up chart-testing
        uses: helm/chart-testing-action@v2.6.0
      - name: Add repos
        run: |
          helm repo add bitnami https://charts.bitnami.com/bitnami
          helm repo add seqr-helm https://broadinstitute.github.io/seqr-helm
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: Chart Lint
        run: ct lint --all
      - name: Create folder
        run: sudo mkdir -p /var/seqr; sudo chmod 777 /var/seqr
      - name: Create kind cluster
        uses: helm/kind-action@v1.8.0
        with:
          cluster_name: "kind"
          config: "kind.yaml"
      - name: Run Chart Templating Unit Tests
        run: python3 -m unittest unit_test/**/*.py
      - name: Test Seqr Chart Installation
        run: |
          # Add secrets
          kubectl create secret generic postgres-secrets --from-literal=password='super-secure-password'
          kubectl create secret generic seqr-secrets --from-literal=django_key='securely-generated-key'

          ct install --charts charts/seqr --namespace default --helm-extra-args '--timeout 500s'