diff --git a/.github/workflows/unit_tests.yaml b/.github/workflows/unit_tests.yaml index 6162ff95..f14d71e9 100644 --- a/.github/workflows/unit_tests.yaml +++ b/.github/workflows/unit_tests.yaml @@ -34,3 +34,5 @@ jobs: uses: helm/kind-action@v1.8.0 - name: Run Chart Templating Unit Tests run: python3 -m unittest unit_test/**/*.py + - name: Test hail search install + run: ct install --charts charts/hail-search diff --git a/charts/hail-search/values.yaml b/charts/hail-search/values.yaml index f145a6d8..37913a93 100644 --- a/charts/hail-search/values.yaml +++ b/charts/hail-search/values.yaml @@ -2,7 +2,7 @@ # This is a YAML-formatted file. # Declare variables to be passed into your templates. -replicaCount: 4 +replicaCount: 1 image: repository: gcr.io/seqr-project/seqr-hail-search @@ -53,7 +53,7 @@ initContainers: |- {{- range $path, $queries := $.Values.cachedReferenceDatasetQueries -}} - name: mkdir-{{ $path | replace "/" "-" | replace "_" "-" | lower}} image: busybox:1.35 - command: ['/bin/mkdir', '-p', '{{ $.Values.environment.DATASETS_DIR }}/{{ $path | replace "SV" "SV_WGS" | replace "GCNV" "SV_WES"}}'] + command: ['/bin/mkdir', '-p', '{{ $.Values.environment.DATASETS_DIR }}/{{ $path }}'] volumeMounts: - mountPath: {{ $.Values.environment.DATASETS_DIR }} name: datasets