diff --git a/3rd-party-tools/m3c-yap-hisat/Dockerfile b/3rd-party-tools/m3c-yap-hisat/Dockerfile index 96850bec..f6f7bcba 100644 --- a/3rd-party-tools/m3c-yap-hisat/Dockerfile +++ b/3rd-party-tools/m3c-yap-hisat/Dockerfile @@ -3,7 +3,9 @@ FROM --platform="linux/amd64" mambaorg/micromamba:0.23.0 WORKDIR /usr/gitc RUN echo $PATH -ENV PATH="$PATH:/opt/conda/bin:/root/pkg/hisat-3n" +ENV GCLOUD_DIR="/opt/gcloud" \ + GOOGLE_CLOUD_CLI_VERSION="397.0.0" +ENV PATH="/opt/conda/bin:/root/pkg/hisat-3n:$GCLOUD_DIR/google-cloud-sdk/bin:$PATH" RUN echo $PATH USER root @@ -49,4 +51,4 @@ RUN mkdir -p ~/pkg; \ curl -so $HOME/google-cloud-cli.tar.gz https://dl.google.com/dl/cloudsdk/channels/rapid/downloads/google-cloud-cli-${GOOGLE_CLOUD_CLI_VERSION}-linux-x86_64.tar.gz; \ tar -xzf $HOME/google-cloud-cli.tar.gz -C $GCLOUD_DIR; \ .$GCLOUD_DIR/google-cloud-sdk/install.sh --usage-reporting false; \ - rm $HOME/google-cloud-cli.tar.gz; \ + rm $HOME/google-cloud-cli.tar.gz