diff --git a/tools/scripts/create_h5ad_optimus.py b/tools/scripts/create_h5ad_optimus.py index be82fd83..f5f2cea4 100755 --- a/tools/scripts/create_h5ad_optimus.py +++ b/tools/scripts/create_h5ad_optimus.py @@ -169,6 +169,7 @@ def generate_col_attr(args): "n_fragments", "fragments_with_single_read_evidence", "molecules_with_single_read_evidence", + "reads_mapped_mitochondrial", "perfect_cell_barcodes", "reads_mapped_intergenic", "reads_unmapped", diff --git a/tools/scripts/create_snrna_optimus_exons_h5ad.py b/tools/scripts/create_snrna_optimus_exons_h5ad.py index b69ba954..30caaf98 100644 --- a/tools/scripts/create_snrna_optimus_exons_h5ad.py +++ b/tools/scripts/create_snrna_optimus_exons_h5ad.py @@ -162,6 +162,7 @@ def generate_col_attr(barcode_1_path,barcode_2_path,cell_metrics_path): "n_fragments", "fragments_with_single_read_evidence", "molecules_with_single_read_evidence", + "reads_mapped_mitochondrial", "perfect_cell_barcodes", "reads_mapped_intergenic", "reads_unmapped", diff --git a/tools/scripts/create_snrna_optimus_full_h5ad.py b/tools/scripts/create_snrna_optimus_full_h5ad.py index 4da9ca31..76fc03d4 100755 --- a/tools/scripts/create_snrna_optimus_full_h5ad.py +++ b/tools/scripts/create_snrna_optimus_full_h5ad.py @@ -159,6 +159,7 @@ def generate_col_attr(args): "n_fragments", "fragments_with_single_read_evidence", "molecules_with_single_read_evidence", + "reads_mapped_mitochondrial", "perfect_cell_barcodes", "reads_mapped_intergenic", "reads_unmapped",