current issues

[jjgao]

Main page:

• change "Cancer Hotspots" to "3D Hotspots"
• change to "A resource for statistically significant 3D hotspot mutations in cancer"
• change to "3D hotspots identified in 11,119 tumor samples"
• color code Residue and Class columns
• change text to "3D hotspots identified in 11,119 tumor samples across 41 tumor types"
• paging -- 20 / page, no scrollbar
• remove "3D Clusters" column and link to the residue page in the Residue column
• rename the first column to "Gene"
• rename "Variant Amino Acid" to "Variants"
• rename "Sample Count" to "Samples"
• change logo
• sort residues by position
• change to "A RESOURCE FOR STATISTICALLY SIGNIFICANT MUTATIONS CLUSTERING IN 3D PROTEIN STRUCTURES IN CANCER"
• change to "Mutations clustering in 3D protein structures identified in 11,119 tumor samples across 41 tumor types"
• change classes to: H - Hotspot, LH - Hotspot-linked, LL - Cluster-exclusive
• change the browser tab name to "3D Hotspots"
  

Residue page:

• has the "Sample Count" column been fixed?
• display all 3D hotspot residues in the gene by default
• don't show all alignments when initialization or mouse-over
• show residues in the cluster only when clicking on a row
• add the variant residues to the mutation diagram
• link to pdb viewer in the tooltip
• add background color in all rows for the residue when hovering
• show structure by default
• make the table smaller so that the pdb structure won't block the table
• add checkboxes in Cluster column -- show residues of selected clusters in the mutation diagram (show all if no checkboxes are selected)
• do not hide other residues when hovering on residues column
• add a legend for the colors (gene page too)
• Hide "About" page
• "Download" should download this spreadsheet
• gene page
• MutationMapper integration via the API