v5.3.8

✨ Enhancements

• Add new "queue" gene icon to study view gene tables @alisman (#4617)
• ✨ Add PatientIdentifiers URL Parameter @haynescd (#4616)
• Add TCGA Pancan pathways to query selector @inodb (#4610)

🐛 Bug Fixes

• Fix profile filtering when adding Generic Entity IDs in Oncoprint @oplantalech @alisman (#4596)

👷‍♀️ Testing, Configuration & Deployment

• update screenshots after oncokb change @alisman (#4623)

🧰 Maintenance

• Update svg2pdf to fix broken Overlap charts download @dippindots (#4601)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.7...v5.3.8
• Frontend: v5.3.7...v5.3.8

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.7

🧬 Features

• Structural variants tab on results view (phase 1) @fuzhaoyuan (#4588)

✨ Enhancements

• 🔧 Add configurability for StudyDownloadUrl @haynescd (#4602)
• Filter Clinical Attribute Charts when priority is -1 @haynescd (#4598)
• Add a configurable legend to timeline tracks @alisman (#4593)

🐛 Bug Fixes

• Correct sample icon coloring on the patient view @gblaih (#4613)
• Fix broken civic links @onursumer (#4612)

👷‍♀️ Testing, Configuration & Deployment

• Disable keycloak caching for localdb tests @dippindots (#4615)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.6...v5.3.7
• Frontend: v5.3.6...v5.3.7

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.6

🧬 Features

• Add revue icon for revue variants @leexgh (#4589)

✨ Enhancements

• Download data from study view treatment tables @Player256 (#4595)
• 🔧 Add Configurable Param for max number of samples in study vi… @haynescd (#4587)

🐛 Bug Fixes

• Import image as source for revue logo @leexgh (#4606)
• Check undefined revue for mutation type and protein change column @leexgh (#4605)
• Check undefined annotation_summary when fetching revue @leexgh (#4604)

🏎 Performance Tweaks

• Study view km plot optimization @dippindots (#4520)

🎨 Style Tweaks

• Optimize Vue icon image @alisman (#4608)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.5...v5.3.6
• Frontend: v5.3.5...v5.3.6

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.5

🐛 Bug Fixes

• Filter SV by custom driver annotations in oncoprint and study page @BasLee (#4552)
• Fix oncokb card for intragenic gene in mutation table @alisman (#4594)
• 🐛 Add Missing Operations Button Txt to Clinical Event Type Table @haynescd (#4592)

🎨 Style Tweaks

• Tweak style of oncoprint controls @aditygrg2 (#4548)

🧰 Maintenance

• Update api clients @alisman (#4591)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.4...v5.3.5
• Frontend: v5.3.4...v5.3.5

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.4

🧬 Enhancements

• Impl. study search on Query Page using 'study tags' @BasLee (#4571)
• Improve Oncoprint Add-track UI @aditygrg2 (#4542)

🐛 Bug Fixes

• Hide defunct download tab on home page @gblaih (#4585)

🧰 Maintenance

• Update yarn lock file to fix build error @alisman (#4584)
• [Snyk] Security upgrade xml2js from 0.4.23 to 0.5.0 @oplantalech (#4578)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.3...v5.3.4
• Frontend: v5.3.3...v5.3.4

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.3

🧬 Features

• Disable autocommit and manually commit filters in study view @BasLee (#4502)

🐛 Bug Fixes

• Disable oncokb fetch from MutationMapper when show_oncokb config is off @alisman (#4572)

👷‍♀️ Testing, Configuration & Deployment

• Update circleci config to parametrize Workflow for e2e tests @haynescd (#4570)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.2...v5.3.3
• Frontend: v5.3.2...v5.3.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.2

🧬 Features

• Allow numeric data type for custom data charts @TJMKuijpers (#4533)

✨ Enhancements

• Update gene related search in Oncoprint and Plots tab @dippindots (#4517)
• Oql upstream downstream fusions in oncoprint @pvannierop (#4494)

🐛 Bug Fixes

• Apply oncokb configuration to patient page (where it was missing) @alisman (#4568)
• Fix showNA undefined for numerical data type @TJMKuijpers (#4562)

👷‍♀️ Testing, Configuration & Deployment

• Add screenshots and adjust waitForOncoprint @alisman (#4573)
• Fix localdb keycloak docker image issue @fuzhaoyuan (#4564)

🧰 Maintenance

• Update api clients and make associated changes @alisman (#4567)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.1...v5.3.2
• Frontend: v5.3.1...v5.3.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.1

✨ Enhancements

• ✨ Add Clinical Event Type Counts Table @haynescd (#4530)

🐛 Bug Fixes

• Fix driver/vus filter in badge selector for results and comparison @gblaih (#4559)
• 🐛 Update Freq Col Alignment in Timeline Event Availability Chart @haynescd (#4558)
• Selected genes list populates when there is only one group selected @jfkonecn (#4551)

👷‍♀️ Testing, Configuration & Deployment

• Fix and reduce flakiness in oncoprint tests @gblaih (#4560)
• Update screenshots after data change @alisman (#4557)
• Fix studyview e2e failure @alisman (#4555)
• Add compression in some GSVA tests @oplantalech (#4549)
• Don't do retries in cancer gene filter test @alisman (#4554)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.0...v5.3.1
• Frontend: v5.3.0...v5.3.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.0

🧬 Features

• Edit filter panel layout and group "Other" mutations into drivers and vus in comparison lollipop @gblaih (#4524)

✨ Enhancements

• Enable expression and protein data on multi-study when configurable condition is met @alisman (#4534)
• Pathway mapper followup issues @YusufZiyaOzgul (#4480)

👷‍♀️ Testing, Configuration & Deployment

• Fix LocalDB e2e StudyView Test @haynescd (#4550)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.2.11...v5.2.12
• Frontend: v5.2.11...v5.2.12

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.2.11

🧬 Features

• Support '::' structural variant notation in OQL @pvannierop (#4413)

🐛 Bug Fixes

• Patient view tooltip months numbers should be rounded @dubincorey (#4531)
• MSKTabs should not interpret tooltip clicks as clicks on tab buttons @jfkonecn (#4538)
• Right Aligned numbers in study view @aditygrg2 (#4539)

👷‍♀️ Testing, Configuration & Deployment

• Fix the localdb tests for ARM architecture macOS @fuzhaoyuan (#4535)

🧰 Maintenance

• Update API clients @alisman (#4543)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.2.10...v5.2.11
• Frontend: v5.2.10...v5.2.11

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning