From f47abb491c2841c8d16d2085f32eb0a3ea3e01d2 Mon Sep 17 00:00:00 2001 From: David Jones Date: Mon, 30 Jun 2014 14:38:18 +0100 Subject: [PATCH] Update output.c Fixed format for mutation line output. Format fields didn't match the header FORMAT entries. --- src/output.c | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/output.c b/src/output.c index 35841b7..00472ae 100644 --- a/src/output.c +++ b/src/output.c @@ -53,7 +53,7 @@ static const char *VCF_FORMAT_KEY = "FORMAT"; static const char *VCF_INFO_KEY = "INFO"; static const char *VCF_PEDIGREE_KEY= "PEDIGREE"; static const char *VCF_FILE_KEY = "File"; -static const char *VCF_VAR_FORMAT_LINE = "GT:AF:CF:GF:TF:AR:CR:GR:TR:PM"; +static const char *VCF_VAR_FORMAT_LINE = "GT:FAZ:FCZ:FGZ:FTZ:RAZ:RCZ:RGZ:RTZ:PM"; static const char *VCF_FORMAT_A_FWD_COUNT = "ID=FAZ,Number=1,Type=Integer,Description=\"Reads presenting a A for this position, forward strand\""; static const char *VCF_FORMAT_C_FWD_COUNT = "ID=FCZ,Number=1,Type=Integer,Description=\"Reads presenting a C for this position, forward strand\""; static const char *VCF_FORMAT_G_FWD_COUNT = "ID=FGZ,Number=1,Type=Integer,Description=\"Reads presenting a G for this position, forward strand\"";