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Quality Control subworkflow #38

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1 of 14 tasks
nicola-calonaci opened this issue May 30, 2024 · 0 comments
Open
1 of 14 tasks

Quality Control subworkflow #38

nicola-calonaci opened this issue May 30, 2024 · 0 comments
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@valerianilucrezia @vvvirgy

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@nicola-calonaci
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nicola-calonaci commented May 30, 2024 •
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Implement a workflow that performs quality control input data.

  • Module implementation

    • CNAqc
      • Management of mutations with VAF = 0
      • Management of purity errors @vvvirgy
    • TINC @vvvirgy
      • Strategy to decide PASS/FAIL
      • Strategy of pipeline error message

  • Tests

    • Test scripts locally
    • Test sub-workflow independently
    • Test whole pipeline

  • Reports

    • Individual plots
    • Comprehensive report
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@nicola-calonaci @valerianilucrezia @vvvirgy