DESCRIPTION

Package: Rcongas
Type: Package
Title: Copy Number Alterations genotyping from single-cell multiomics 
Version: 0.2.0
Authors@R: c(person("Salvatore", "Milite", role=c("aut"), email="militesalvatore@gmail.com"),
    person("Lucrezia", "Patruno", role=c("aut", "cre"), email="l.patruno@ucl.ac.uk"),
    person("Riccardo", "Bergamin", role=c("aut"), email="riccardo.bergamin@units.it"),
    person("Giulio", "Caravagna", role=c("aut"), email="gcaravagn@gmail.com"))
Maintainer: Cancer Data Science Laboratory <gcaravagn@gmail.com>
Description: This package provides an interface, implemented through reticulate, to the CONGAS Python package; thus
    acting as an easy frontend to work from R and run the Pyro models available in CONGAS. While it should be callsed (R)CONGAS+, 
    for simplicity we keep calling it just Rcongas. The package contains anumber of functions to input and pre-process 
    single-cell datasets, to compute fits through the Pyro modules in Python, as well as to visualise and post-process fits within R.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Config/reticulate:
  list(
    packages = list(
      list(package = 'git+https://github.com/caravagnalab/CONGASp', pip = TRUE)
    )
  )
biocViews:
Imports:
    tidyr,
    tibble,
    crayon,
    cli,
    reshape2,
    stats4,
    cowplot,
    progress,
    dplyr,
    ggplot2,
    CNAqc,
    reticulate,
    magrittr,
    gtools,
    fitdistrplus,
    Matrix,
    readr,
    tidyr,
    glue
Suggests:
    biomaRt,
    knitr,
    rmarkdown
Remotes: 
  caravagnalab/CNAqc
Depends: 
    R (>= 2.10)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)