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hifiasm log file #700

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Samyuktha9624 opened this issue Sep 3, 2024 · 0 comments
Open

hifiasm log file #700

Samyuktha9624 opened this issue Sep 3, 2024 · 0 comments

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@Samyuktha9624
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Hello,

This is my first time using hifiasm. The assembly I am building is an insect diploid genome of size 400Mb. The assembly is not contiguous (N50 value 210771), I read about tweaking parameters for improving the contiguity, I am also running blobtools to check for contaminants. I would like to take a look at the k-mer plot built by hifiasm but I do not have a log file output. How do I get a log file?

I used Genomescope and the plot is weird without any definite peaks.

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