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modules.json
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modules.json
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{
"name": "nf-ncov-voc",
"homePage": "https://github.com/cidgoh/nf-ncov-voc",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcftools/index": {
"branch": "master",
"git_sha": "44096c08ffdbc694f5f92ae174ea0f7ba0f37e09",
"installed_by": [
"bam_variant_calling_sort_freebayes_bcftools",
"modules"
]
},
"bcftools/norm": {
"branch": "master",
"git_sha": "44096c08ffdbc694f5f92ae174ea0f7ba0f37e09",
"installed_by": ["modules"]
},
"bcftools/sort": {
"branch": "master",
"git_sha": "44096c08ffdbc694f5f92ae174ea0f7ba0f37e09",
"installed_by": ["bam_variant_calling_sort_freebayes_bcftools"]
},
"bwa/index": {
"branch": "master",
"git_sha": "6278bf9afd4a4b2d00fa6052250e73da3d91546f",
"installed_by": ["modules"]
},
"bwa/mem": {
"branch": "master",
"git_sha": "b97197968ac12dde2463fa54541f6350c46f2035",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "003920c7f9a8ae19b69a97171922880220bedf56",
"installed_by": ["modules"]
},
"freebayes": {
"branch": "master",
"git_sha": "77978839bef6d437f21edb900b49bcbc04f9f735",
"installed_by": [
"bam_variant_calling_sort_freebayes_bcftools",
"modules"
]
},
"freyja/boot": {
"branch": "master",
"git_sha": "7e33bdd8b4faf45be1be6a6f49979f0f0820d243",
"installed_by": ["bam_variant_demix_boot_freyja"]
},
"freyja/demix": {
"branch": "master",
"git_sha": "7e33bdd8b4faf45be1be6a6f49979f0f0820d243",
"installed_by": ["bam_variant_demix_boot_freyja", "modules"]
},
"freyja/update": {
"branch": "master",
"git_sha": "7e33bdd8b4faf45be1be6a6f49979f0f0820d243",
"installed_by": ["bam_variant_demix_boot_freyja", "modules"]
},
"freyja/variants": {
"branch": "master",
"git_sha": "7e33bdd8b4faf45be1be6a6f49979f0f0820d243",
"installed_by": ["bam_variant_demix_boot_freyja", "modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "3a5fef109d113b4997c9822198664ca5f2716208",
"installed_by": ["modules"]
},
"ivar/trim": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"ivar/variants": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "a2bdfeb492a87ab3e6a80d3f0b13fe7daba12cab",
"installed_by": ["modules"]
},
"nextclade/datasetget": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"nextclade/run": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"pangolin": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"samtools/fastq": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/mpileup": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"samtools/view": {
"branch": "master",
"git_sha": "0bd7d2333a88483aa0476acea172e9f5f6dd83bb",
"installed_by": ["modules"]
},
"seqkit/grep": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"seqkit/replace": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"seqkit/stats": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"tabix/bgziptabix": {
"branch": "master",
"git_sha": "09d3c8c29b31a2dfd610305b10550f0e1dbcd4a9",
"installed_by": ["modules"]
},
"xz/compress": {
"branch": "master",
"git_sha": "937019f157390f0686eec9e0100bff5c8977be31",
"installed_by": ["modules"]
},
"xz/decompress": {
"branch": "master",
"git_sha": "99cdd5ff83f89c6cdb24e0f1863912708dc83bd0",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools"]
},
"bam_variant_calling_sort_freebayes_bcftools": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["subworkflows"]
},
"bam_variant_demix_boot_freyja": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["subworkflows"]
}
}
}
}
}
}