A primer for an R package to explore VDJ diversity. Requires the tidyverse R package.
Tools provided:
- merge individual output files from MIXCR into a single table
- calculate equitability scores
- calculate VDJ+/VDJ- ratios
- plot clonotype & equitability boxplots
Tools to add: - retrieve DJ rearrangements (a bash script that uses the mixcr tool)
- calculate VDJ/DJ ratios
- identify DJ juntions