From 84550c3e14318bb333f4df6654bab689e29dd356 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?P=C3=A1draic=20Corcoran?=
 <padraicc@users.noreply.github.com>
Date: Tue, 26 Sep 2023 12:47:40 +0200
Subject: [PATCH] fix: Update input files for multiqc report

---
 config/config.yaml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/config/config.yaml b/config/config.yaml
index fa5a64d..e5f5d8f 100644
--- a/config/config.yaml
+++ b/config/config.yaml
@@ -238,8 +238,13 @@ multiqc:
         - "qc/fastqc/{sample}_{type}_{flowcell}_{lane}_{barcode}_fastq1_fastqc.zip"
         - "qc/fastqc/{sample}_{type}_{flowcell}_{lane}_{barcode}_fastq2_fastqc.zip"
         - "qc/mosdepth/{sample}_{type}.mosdepth.summary.txt"
+        - "qc/mosdepth_bed/{sample}_{type}.per-base.bed.gz"
+        - "qc/mosdepth_bed/{sample}_{type}.thresholds.bed.gz"
+        - "qc/mosdepth_bed/{sample}_{type}.regions.bed.gz"
         - "qc/mosdepth/{sample}_{type}.mosdepth.region.dist.txt"
         - "qc/mosdepth/{sample}_{type}.mosdepth.global.dist.txt"
+        - "qc/peddy/peddy.peddy.ped"
+        - "qc/peddy/peddy.background_pca.json"
         - "qc/peddy/peddy.ped_check.csv"
         - "qc/peddy/peddy.sex_check.csv"
         - "qc/peddy/peddy.het_check.csv"