From ad0c5b1478b17a44748b73d3f432d683736596a9 Mon Sep 17 00:00:00 2001
From: Padraic Corcoran <padraic.corcoran@scilifelab.uu.se>
Date: Mon, 21 Aug 2023 10:12:35 +0200
Subject: [PATCH] feat: handle cases in the sample sheet where the sex is
 unknown

---
 extract_sample_sheet_info.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/extract_sample_sheet_info.py b/extract_sample_sheet_info.py
index 168e93b..527ae56 100644
--- a/extract_sample_sheet_info.py
+++ b/extract_sample_sheet_info.py
@@ -12,6 +12,8 @@ def translate_sex(sex_code):
         sex = "male"
     elif sex_code == "K":
         sex = "female"
+    elif sex_code == "O":
+        sex = "unknown"
     else:
         print('Sex is not specified correctly in the Sample Sheet')
         sys.exit(1)