diff --git a/tests/test_LDpred2/scripts/ld.sh b/tests/test_LDpred2/scripts/ld.sh index 6006741..27513a9 100644 --- a/tests/test_LDpred2/scripts/ld.sh +++ b/tests/test_LDpred2/scripts/ld.sh @@ -11,7 +11,7 @@ LDP="$RSCRIPT $DIR_SCRIPTS/ldpred2.R \ --ld-meta-file $dirOut/map.rds \ --merge-by-rsid --set-seed 1 \ --col-stat beta --col-stat-se beta_se \ - --col-snp-id rsid --col-chr chr --col-bp pos --col-A1 a1 --col-A2 a0 \ + --col-snp-id rsid --col-chr chr --col-A1 a1 --col-A2 a0 \ --geno-file-rds $fileOutputSNPR --sumstats $fileInputSumStats" echo "Running unittests on functions"