-
Notifications
You must be signed in to change notification settings - Fork 3
/
FI_Drive.m
112 lines (83 loc) · 3.89 KB
/
FI_Drive.m
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Copyright Xin-Guang Zhu, Yu Wang, Donald R. ORT and Stephen P. LONG
%CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, CAS, Shanghai,200031
%China Institute of Genomic Biology and Department of Plant Biology, Shanghai Institutes for Biological Sciences, CAS, Shanghai,200031
%University of Illinois at Urbana Champaign
%Global Change and Photosynthesis Research Unit, USDA/ARS, 1406 Institute of Genomic Biology, Urbana, IL 61801, USA.
% This file is part of e-photosynthesis.
% e-photosynthesis is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation;
% e-photosynthesis is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
% You should have received a copy of the GNU General Public License (GPL)
% along with this program. If not, see <http://www.gnu.org/licenses/>.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Begin = 1;
fin = SYSInitial(Begin);
global options1;
global tglobal;
time = tglobal;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Get the initial condition %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
FI_Con = FI_Ini(Begin);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Getting the Velocity from FI_Rate.m %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
global FI_OLD_TIME;
global FI_TIME_N;
global FI_VEL;
global FI_CON;
FI_OLD_TIME = 0;
FI_TIME_N = 1;
FI_VEL = zeros(1,5); % Clean memory
FI_CON = zeros(5,1); % Clean memory
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Assign the major parameters in the system %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
va1 = 0;
global PS12ratio;
FI_Param = zeros(5,1);
FI_Param(1) = va1;
FI_Param(2) = PS12ratio;
ModelComb = IniModelCom; % Initialize the structure of the model, i.e. Is this model separate or combined with others.
[Tt,d] = ode15s(@FI_MB,[0,time],FI_Con,options1,FI_Param);
for m = 1:10
subplot(2,5,m);p = plot(log10(Tt),d(:,m),'.');ylabel('micro mol/m2');xlabel('log 10 second');suc = FI_AddTitle(m,p,1);
end
pause;
for m = 11:20
subplot(2,5,m-10);p = plot(log10(Tt),d(:,m),'.');ylabel('micro mol/m2');xlabel('log 10 second');suc = FI_AddTitle(m,p,1);
end
pause;
for m = 1:10
subplot(2,5,m);p = plot(log10(FI_VEL(:,1)),FI_VEL(:,m+1),'.');ylabel('micro mol/m2/s');xlabel('log 10 second');suc = FI_AddTitle(m,p,2);
end
pause;
for m = 11:20
subplot(2,5,m-10);p = plot(log10(FI_VEL(:,1)),FI_VEL(:,m+1),'.');ylabel('micro mol/m2/s');xlabel('log 10 second');suc = FI_AddTitle(m,p,2);
end
pause;
for m = 21:30
subplot(2,5,m-20);p = plot(log10(FI_VEL(:,1)),FI_VEL(:,m+1),'.');ylabel('micro mol/m2/s');xlabel('log 10 second');suc = FI_AddTitle(m,p,2);
end
pause;
for m = 31:40
subplot(2,5,m-30);p = plot(log10(FI_VEL(:,1)),FI_VEL(:,m+1),'.');ylabel('micro mol/m2/s');xlabel('log 10 second');suc = FI_AddTitle(m,p,2);
end
pause;
for m = 41:50
subplot(2,5,m-40);p = plot(log10(FI_VEL(:,1)),FI_VEL(:,m+1),'.');ylabel('micro mol/m2/s');xlabel('log 10 second');suc = FI_AddTitle(m,p,2);
end
pause;
for m = 51:53
subplot(1,3,m-50);p = plot(log10(FI_VEL(:,1)),FI_VEL(:,m+1),'.');ylabel('micro mol/m2/s');xlabel('log 10 second');suc = FI_AddTitle(m,p,2);
end
pause;
for m = 1:5
subplot(1,5,m);p = plot(log10(FI_VEL(:,1)),FI_CON(:,m+1),'.');ylabel('micro mol/m2/s');xlabel('log 10 second');suc = FI_AddTitle(m,p,3);
end
IniModelCom;