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Sorghum 3D Reconstruction

Implementation of the papers:

  • Voxel Carving Based 3D Reconstruction of Sorghum Identifies Genetic Determinants of Radiation Interception Efficiency
  • Sorghum Segmentation by Skeleton Extraction

Please cite our work

Mathieu Gaillard, Chenyong Miao, James C. Schnable, Bedrich Benes: Voxel Carving Based 3D Reconstruction of Sorghum Identifies Genetic Determinants of Radiation Interception Efficiency. Plant Direct (2020). https://doi.org/10.1002/pld3.255

@article{Gaillard20PlantDirect,
  author = {Gaillard, Mathieu and Miao, Chenyong and Schnable, James C. and Benes, Bedrich},
  title = {Voxel carving-based 3D reconstruction of sorghum identifies genetic determinants of light interception efficiency},
  journal = {Plant Direct},
  volume = {4},
  number = {10},
  pages = {e00255},
  keywords = {3D plant reconstruction, phenotyping, quantitative genetics, sorghum},
  doi = {10.1002/pld3.255},
  year = {2020},
}

Mathieu Gaillard, Chenyong Miao, James C. Schnable, Bedrich Benes: Sorghum Segmentation by Skeleton Extraction. ECCV Workshops (2020). https://doi.org/10.1007/978-3-030-65414-6_21

@inproceedings{Gaillard20ECCV,
  author = {Gaillard, Mathieu and Miao, Chenyong and Schnable, James and Benes, Bedrich},
  editor = {Bartoli, Adrien and Fusiello, Andrea},
  title = {Sorghum Segmentation by Skeleton Extraction},
  booktitle=  {Computer Vision -- ECCV 2020 Workshops},
  year = {2020},
  publisher = {Springer International Publishing},
  address = {Cham},
  pages = {296--311},
  isbn = {978-3-030-65414-6},
  doi = {10.1007/978-3-030-65414-6_21}
}

Getting started

Run on a dataset

See instructions in the scripts/Readme.md file.

Build the main application

Open the solution and make sure you selected a Release and x64 build.
Press F5 to build and run within Visual Studio.

Prerequisites

  • Visual Studio 2019
  • Qt Visual Studio Tools
  • Qt 5.12 LTS
  • OpenCV 3.4
  • DGTal 1.0

Authors

  • Mathieu Gaillard, Purdue University
  • Chenyong Miao, University of Nebraska-Lincoln
  • James C. Schnable, University of Nebraska-Lincoln
  • Bedrich Benes, Purdue University

License

See the LICENSE file.