diff --git a/DESCRIPTION b/DESCRIPTION index c844067..4f18184 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,8 @@ Package: ExploreModelMatrix Type: Package Title: Graphical Exploration of Design Matrices -Version: 1.15.0 +Version: 1.15.1 +Date: 2024-03-02 Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), email = "charlottesoneson@gmail.com", comment = c(ORCID = "0000-0003-3833-2169")), @@ -44,7 +45,7 @@ Imports: limma, S4Vectors, shinyjs -RoxygenNote: 7.2.3 +RoxygenNote: 7.3.1 Suggests: testthat (>= 2.1.0), knitr, diff --git a/R/ExploreModelMatrix-pkg.R b/R/ExploreModelMatrix-package.R similarity index 88% rename from R/ExploreModelMatrix-pkg.R rename to R/ExploreModelMatrix-package.R index 7a1d6a6..d046fe3 100644 --- a/R/ExploreModelMatrix-pkg.R +++ b/R/ExploreModelMatrix-package.R @@ -7,9 +7,9 @@ #' explore the fitted values (in terms of the model coefficients) for each #' combination of predictor values. #' -#' @name ExploreModelMatrix-pkg -#' @docType package -NULL +#' @keywords internal +#' @aliases ExploreModelMatrix-package NULL +"_PACKAGE" globalVariables(c("colorby", "value", "vjust", "coefficient", "Sample", "vif", "nSamples", "rows", "cols", diff --git a/man/ExploreModelMatrix-package.Rd b/man/ExploreModelMatrix-package.Rd new file mode 100644 index 0000000..3ef6345 --- /dev/null +++ b/man/ExploreModelMatrix-package.Rd @@ -0,0 +1,35 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/ExploreModelMatrix-package.R +\docType{package} +\name{ExploreModelMatrix-package} +\alias{ExploreModelMatrix-package} +\title{ExploreModelMatrix} +\description{ +ExploreModelMatrix is an R package for visualizing design matrices generated +by the \code{model.matrix()} R function. +Provided with a sample data table and a design formula, the +\code{ExploreModelMatrix()} function launches a shiny app where the user can +explore the fitted values (in terms of the model coefficients) for each +combination of predictor values. +} +\seealso{ +Useful links: +\itemize{ + \item \url{https://github.com/csoneson/ExploreModelMatrix} + \item Report bugs at \url{https://github.com/csoneson/ExploreModelMatrix/issues} +} + +} +\author{ +\strong{Maintainer}: Charlotte Soneson \email{charlottesoneson@gmail.com} (\href{https://orcid.org/0000-0003-3833-2169}{ORCID}) + +Authors: +\itemize{ + \item Federico Marini \email{marinif@uni-mainz.de} (\href{https://orcid.org/0000-0003-3252-7758}{ORCID}) + \item Michael Love \email{michaelisaiahlove@gmail.com} (\href{https://orcid.org/0000-0001-8401-0545}{ORCID}) + \item Florian Geier \email{florian.geier@unibas.ch} (\href{https://orcid.org/0000-0002-9076-9264}{ORCID}) + \item Michael Stadler \email{michael.stadler@fmi.ch} (\href{https://orcid.org/0000-0002-2269-4934}{ORCID}) +} + +} +\keyword{internal} diff --git a/man/ExploreModelMatrix-pkg.Rd b/man/ExploreModelMatrix-pkg.Rd deleted file mode 100644 index 7aa9798..0000000 --- a/man/ExploreModelMatrix-pkg.Rd +++ /dev/null @@ -1,14 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/ExploreModelMatrix-pkg.R -\docType{package} -\name{ExploreModelMatrix-pkg} -\alias{ExploreModelMatrix-pkg} -\title{ExploreModelMatrix} -\description{ -ExploreModelMatrix is an R package for visualizing design matrices generated -by the \code{model.matrix()} R function. -Provided with a sample data table and a design formula, the -\code{ExploreModelMatrix()} function launches a shiny app where the user can -explore the fitted values (in terms of the model coefficients) for each -combination of predictor values. -}