Version 0.1 release

[gwaybio]

Hi community - @niranjchandrasekaran @shntnu @AnneCarpenter @bethac07 @staylorx @falquaddoomi to name a few.

I'd like to release the first official pycytominer version (with a 0.1 tag). Releasing this version will allow a smoother pip install experience, and will enable us to push to either conda-forge or bioconda. It will also mark a nice milestone that I have plans to build upon, and it is good practice for a publication.

I also think that the package is fairly stable, used fairly often, and that only a few more issues need resolution. In other words, in my view, we can release this version very soon (less than a day's work).

However, it's possible I am not seeing the full pictures. My question is therefore, do you see any other necessary items to accomplish before version 0.1 release? Possibly some functionality in the jump branch?

I've added the issues I know of here: https://github.com/cytomining/pycytominer/projects/1 They are up for grabs for folks to claim.

Note that releasing version 0.1 doesn't hinder any existing pipelines (as long as they're being installed via hash).

[shntnu]

However, it's possible I am not seeing the full pictures. My question is therefore, do you see any other necessary items to accomplish before version 0.1 release? Possibly some functionality in the jump branch?

I'm in favor of proceeding with the release and I note that @niranjchandrasekaran and @AnneCarpenter have give their 👍

We needn't wait for the jump branch

All the changes in that branch are related to a single file (effectively)
https://github.com/cytomining/pycytominer/pull/160/files

and that will very likely be moved out of pycytominer anyway
#160 (comment)

[gwaybio]

perfect. I'll wrap up the issues in https://github.com/cytomining/pycytominer/projects/1 and then proceed wit the release.

[staylorx]

Do you want to have pypi push actions in place before you release, or bring those in with 0.2?

…

On Wed, Feb 2, 2022, 15:04 Gregory Way ***@***.***> wrote: perfect. I'll wrap up the issues in https://github.com/cytomining/pycytominer/projects/1 and then proceed wit the release. — Reply to this email directly, view it on GitHub <#181 (reply in thread)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAB4JC6ZTS5S55LZYTYPE5TUZGS75ANCNFSM5NHJAKZA> . You are receiving this because you were mentioned.Message ID: ***@***.***>

[gwaybio]

yeah, we could add that prior to version 0.1 - are you volunteering to set it up? (I haven't ever used them, nor know how much effort it takes 😄 )

I'm motivated to get this released to a stable version as a rotation student will be working on the workflow soon. So, if we can get pypi push actions up before Niranj can review #185 then let's do it!

[staylorx]

It's not a lot to do. Mostly legwork on your part. I can add the scripts, which will fail until the secrets are in place.

You'll need to create accounts on pypi, and I highly recommend creating an account on the test repo of pypi also.

https://pypi.org/account/register/
https://test.pypi.org/account/register/

Once, you've got accounts, you'll get API tokens from both and create secret keys in the setup of this repo so you'll see something with TEST_PYPI_API_TOKEN and PYPI_API_TOKEN (you can name them whatever, but that's usually what I use):

I'll put in a PR with the action file once I run the builds a couple of times to see if it the branch builds wheels cleanly. That might be tomorrow at the rate I'm burning today.

[staylorx]

I can also create the accounts and tokens and push you the passwords if you like. Easy enough, but I don't want to take the fun away from anyone. :)

[gwaybio]

Done! Secrets added as well.

https://test.pypi.org/project/pycytominer/
https://pypi.org/project/pycytominer/

[staylorx]

I created PR #187 for the build and pypi publish. Work in progress as always; I hope it's a start. :)