Singularity

# Your version: 0.6.0 Latest version: 0.6.0
# Generated by Neurodocker version 0.6.0
# Timestamp: 2019-10-20 21:58:19 UTC
# 
# Thank you for using Neurodocker. If you discover any issues
# or ways to improve this software, please submit an issue or
# pull request on our GitHub repository:
# 
#     https://github.com/kaczmarj/neurodocker

Bootstrap: docker
From: debian:testing

%post
export ND_ENTRYPOINT="/neurodocker/startup.sh"
apt-get update -qq
apt-get install -y -q --no-install-recommends \
    apt-utils \
    bzip2 \
    ca-certificates \
    curl \
    locales \
    unzip
apt-get clean
rm -rf /var/lib/apt/lists/*
sed -i -e 's/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/' /etc/locale.gen
dpkg-reconfigure --frontend=noninteractive locales
update-locale LANG="en_US.UTF-8"
chmod 777 /opt && chmod a+s /opt
mkdir -p /neurodocker
if [ ! -f "$ND_ENTRYPOINT" ]; then
  echo '#!/usr/bin/env bash' >> "$ND_ENTRYPOINT"
  echo 'set -e' >> "$ND_ENTRYPOINT"
  echo 'export USER="${USER:=`whoami`}"' >> "$ND_ENTRYPOINT"
  echo 'if [ -n "$1" ]; then "$@"; else /usr/bin/env bash; fi' >> "$ND_ENTRYPOINT";
fi
chmod -R 777 /neurodocker && chmod a+s /neurodocker

apt-get update -qq
apt-get install -y -q --no-install-recommends \
    python3-h5py \
    python3-pip \
    hdf5-tools
apt-get clean
rm -rf /var/lib/apt/lists/*

mkdir -p /opt/mpidemos

chmod a+rX -R /opt/mpidemos

python3 -m pip install pynwb

test "$(getent passwd nwb)" || useradd --no-user-group --create-home --shell /bin/bash nwb
su - nwb

echo '{
\n  "pkg_manager": "apt",
\n  "instructions": [
\n    [
\n      "base",
\n      "debian:testing"
\n    ],
\n    [
\n      "_header",
\n      {
\n        "method": "custom",
\n        "version": "generic"
\n      }
\n    ],
\n    [
\n      "install",
\n      [
\n        "python3-h5py",
\n        "python3-pip",
\n        "hdf5-tools"
\n      ]
\n    ],
\n    [
\n      "run",
\n      "mkdir -p /opt/mpidemos"
\n    ],
\n    [
\n      "copy",
\n      [
\n        "testme2.py",
\n        "/opt/mpidemos"
\n      ]
\n    ],
\n    [
\n      "run",
\n      "chmod a+rX -R /opt/mpidemos"
\n    ],
\n    [
\n      "run",
\n      "python3 -m pip install pynwb"
\n    ],
\n    [
\n      "user",
\n      "nwb"
\n    ]
\n  ]
\n}' > /neurodocker/neurodocker_specs.json

%environment
export LC_ALL="en_US.UTF-8"
export LANG="en_US.UTF-8"
export ND_ENTRYPOINT="/neurodocker/startup.sh"

%files
testme2.py /opt/mpidemos

%runscript
/neurodocker/startup.sh "$@"