README.md

CAMERA @ LBNL ALS User Meeting'22

Elevate Your microCT Data Processing Workshop - Vision Tutorial

This is a short introduction to Computer Vision, explaining how to handle 2D and 3D image representations using numpy, how to perform key image transformations with scipy and skimage, as well as visualization schemes using matplotlib, plotly, itkwidgets and other python libraries used into the construction of scientific pipelines and workflows.

Title: Python Vision for MicroCT [video] Presenter: Daniela Ushizima Date: Aug 16th 2022 Time: 1pm PT QUICK DOWNLOAD: [NERSC] [Colab] [PDF]

Tutorial Outline:

• 01_getstarted
• 02_stackoverview
• 03_voxeldistribution
• 04_binarypartition
• 05_multiscale
• 06_tridimvis

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Other tutorials:

• Enjoy visualization with itkwidgets: [short tutorial] SuperComputing 2020 by Ushizima, McCormick

• Explore skimage with this ISBI'19 tutorial [long tutorial] by Siqueira, van der Walt, Ushizima

• Microct analysis [full course] CAMERA Tomography Workshop 2019 by Ushizima, Siqueira, Miramontes

  • Lesson 1:
  • Lesson 2:

Warning

This tutorial is under active development, so use at your own risk. Found a bug? File an issue or contact Dani Ushizima

Short link to this page: http://bit.ly/als2022vision